Bump lots of modules so that conda versions have arm builds #46
40 tests run, 0 passed, 0 skipped, 40 failed.
Annotations
Check failure on line 1 in Test Subworkflow PREPARE_GENOME
github-actions / JUnit Test Report
Test Subworkflow PREPARE_GENOME.default options
Assertion failed:
1 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.04.2
Launching `/home/runner/work/rnaseq/rnaseq/.nf-test-640affe0a1cb8973a6782fa01cd6d78.nf` [astonishing_darwin] DSL2 - revision: 58cb1b06f6
Downloading plugin [email protected]
Downloading plugin [email protected]
[86/19f484] Submitted process > PREPARE_GENOME:GTF_FILTER (genome.fasta)
[c8/999f14] Submitted process > PREPARE_GENOME:CUSTOM_CATADDITIONALFASTA (null)
[3e/983400] Submitted process > PREPARE_GENOME:GTF2BED (genome_gfp.gtf)
[bd/d5eef2] Submitted process > PREPARE_GENOME:CUSTOM_GETCHROMSIZES (genome_gfp.fasta)
[08/5b1afe] Submitted process > PREPARE_GENOME:BBMAP_BBSPLIT (null)
Nextflow stderr:
Nextflow 24.04.4 is available - Please consider updating your version to it
Check failure on line 1 in Test Subworkflow PREPARE_GENOME
github-actions / JUnit Test Report
Test Subworkflow PREPARE_GENOME.gencode = false
Assertion failed:
1 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.04.2
Launching `/home/runner/work/rnaseq/rnaseq/.nf-test-fee9f28f43ac32ff0cfd1777afb06410.nf` [intergalactic_goodall] DSL2 - revision: 58cb1b06f6
[0b/9a10a2] Submitted process > PREPARE_GENOME:GTF_FILTER (genome.fasta)
[97/4fdf4d] Submitted process > PREPARE_GENOME:CUSTOM_CATADDITIONALFASTA (null)
[66/c507a5] Submitted process > PREPARE_GENOME:CUSTOM_GETCHROMSIZES (genome_gfp.fasta)
[38/cd46df] Submitted process > PREPARE_GENOME:GTF2BED (genome_gfp.gtf)
[96/c95eeb] Submitted process > PREPARE_GENOME:BBMAP_BBSPLIT (null)
Nextflow stderr:
Nextflow 24.04.4 is available - Please consider updating your version to it
Check failure on line 1 in Test Subworkflow PREPARE_GENOME
github-actions / JUnit Test Report
Test Subworkflow PREPARE_GENOME.skip_gtf_filter
Assertion failed:
1 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.04.2
Launching `/home/runner/work/rnaseq/rnaseq/.nf-test-ddb6453b557df370ed53d11b17893ba5.nf` [small_monod] DSL2 - revision: 7fae19767d
[93/d635b2] Submitted process > PREPARE_GENOME:CUSTOM_CATADDITIONALFASTA (null)
[a3/0d8e5c] Submitted process > PREPARE_GENOME:CUSTOM_GETCHROMSIZES (genome_gfp.fasta)
[b1/6bd3d4] Submitted process > PREPARE_GENOME:GTF2BED (genome_gfp.gtf)
[32/c5cf6e] Submitted process > PREPARE_GENOME:BBMAP_BBSPLIT (null)
Nextflow stderr:
Nextflow 24.04.4 is available - Please consider updating your version to it
Check failure on line 1 in Test Subworkflow PREPARE_GENOME
github-actions / JUnit Test Report
Test Subworkflow PREPARE_GENOME.skip_bbsplit
Assertion failed:
1 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.04.2
Launching `/home/runner/work/rnaseq/rnaseq/.nf-test-45adf83fc482b2dcc3761b2644bad943.nf` [scruffy_turing] DSL2 - revision: 7b440370f4
[b5/a755bd] Submitted process > PREPARE_GENOME:GTF_FILTER (genome.fasta)
[b4/275338] Submitted process > PREPARE_GENOME:CUSTOM_CATADDITIONALFASTA (null)
[d5/b43e6a] Submitted process > PREPARE_GENOME:GTF2BED (genome_gfp.gtf)
[e7/984002] Submitted process > PREPARE_GENOME:CUSTOM_GETCHROMSIZES (genome_gfp.fasta)
Nextflow stderr:
Nextflow 24.04.4 is available - Please consider updating your version to it
Check failure on line 1 in Test Subworkflow PREPARE_GENOME
github-actions / JUnit Test Report
Test Subworkflow PREPARE_GENOME.skip_alignment
Assertion failed:
1 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.04.2
Launching `/home/runner/work/rnaseq/rnaseq/.nf-test-6df1e190828956928df40c7201f2df4d.nf` [sad_golick] DSL2 - revision: 15679e67bc
[ed/9a0025] Submitted process > PREPARE_GENOME:GTF_FILTER (genome.fasta)
[a5/5579b8] Submitted process > PREPARE_GENOME:CUSTOM_CATADDITIONALFASTA (null)
[80/f07a29] Submitted process > PREPARE_GENOME:CUSTOM_GETCHROMSIZES (genome_gfp.fasta)
[00/207aee] Submitted process > PREPARE_GENOME:GTF2BED (genome_gfp.gtf)
[7e/2fd320] Submitted process > PREPARE_GENOME:BBMAP_BBSPLIT (null)
Nextflow stderr:
Nextflow 24.04.4 is available - Please consider updating your version to it
Check failure on line 1 in Test Subworkflow PREPARE_GENOME
github-actions / JUnit Test Report
Test Subworkflow PREPARE_GENOME.skip_pseudo_alignment
Assertion failed:
1 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.04.2
Launching `/home/runner/work/rnaseq/rnaseq/.nf-test-e55d6879442cae099ed51d5836af78f0.nf` [sick_rosalind] DSL2 - revision: f60bd538f1
[6f/a14e5c] Submitted process > PREPARE_GENOME:GTF_FILTER (genome.fasta)
[0f/aa0b2f] Submitted process > PREPARE_GENOME:CUSTOM_CATADDITIONALFASTA (null)
[8b/b08ad7] Submitted process > PREPARE_GENOME:GTF2BED (genome_gfp.gtf)
[d0/50e857] Submitted process > PREPARE_GENOME:CUSTOM_GETCHROMSIZES (genome_gfp.fasta)
[a2/6a692e] Submitted process > PREPARE_GENOME:BBMAP_BBSPLIT (null)
Nextflow stderr:
Nextflow 24.04.4 is available - Please consider updating your version to it
Check failure on line 1 in Test Subworkflow PREPARE_GENOME
github-actions / JUnit Test Report
Test Subworkflow PREPARE_GENOME.gtf = false
Assertion failed:
1 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.04.2
Launching `/home/runner/work/rnaseq/rnaseq/.nf-test-99281af93c7b431e548a22c7c69cf8b0.nf` [ridiculous_morse] DSL2 - revision: 86ce425be1
[c5/d8ff7d] Submitted process > PREPARE_GENOME:GFFREAD (null)
[7e/309a20] Submitted process > PREPARE_GENOME:PREPROCESS_TRANSCRIPTS_FASTA_GENCODE (transcriptome.fasta)
[d5/d16604] Submitted process > PREPARE_GENOME:GTF_FILTER (genome.fasta)
[ed/219776] Submitted process > PREPARE_GENOME:CUSTOM_CATADDITIONALFASTA (null)
[c5/f2f1f0] Submitted process > PREPARE_GENOME:GTF2BED (genome_gfp.gtf)
[33/8cde1a] Submitted process > PREPARE_GENOME:CUSTOM_GETCHROMSIZES (genome_gfp.fasta)
[fa/a09a9e] Submitted process > PREPARE_GENOME:BBMAP_BBSPLIT (null)
Nextflow stderr:
Nextflow 24.04.4 is available - Please consider updating your version to it
Check failure on line 1 in Test Subworkflow PREPARE_GENOME
github-actions / JUnit Test Report
Test Subworkflow PREPARE_GENOME.gff = false
Assertion failed:
1 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.04.2
Launching `/home/runner/work/rnaseq/rnaseq/.nf-test-fdd951cda87b113761f9bf37454ef2c.nf` [dreamy_minsky] DSL2 - revision: e517c50d3b
[53/e8bfbf] Submitted process > PREPARE_GENOME:GTF_FILTER (genome.fasta)
[42/b5fe23] Submitted process > PREPARE_GENOME:CUSTOM_CATADDITIONALFASTA (null)
[92/a75b85] Submitted process > PREPARE_GENOME:GTF2BED (genome_gfp.gtf)
[3f/c539cd] Submitted process > PREPARE_GENOME:CUSTOM_GETCHROMSIZES (genome_gfp.fasta)
[ef/2e73d0] Submitted process > PREPARE_GENOME:BBMAP_BBSPLIT (null)
Nextflow stderr:
Nextflow 24.04.4 is available - Please consider updating your version to it
Check failure on line 1 in Test Subworkflow PREPARE_GENOME
github-actions / JUnit Test Report
Test Subworkflow PREPARE_GENOME.gfp = false
Assertion failed:
1 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.04.2
Launching `/home/runner/work/rnaseq/rnaseq/.nf-test-5e76b1622f3e89214ac015068690bb08.nf` [loving_spence] DSL2 - revision: 1d12e6b471
[08/19cfc8] Submitted process > PREPARE_GENOME:GTF_FILTER (genome.fasta)
[d9/c7b4d4] Submitted process > PREPARE_GENOME:BBMAP_BBSPLIT (null)
[86/b7bcdc] Submitted process > PREPARE_GENOME:CUSTOM_GETCHROMSIZES (genome.fasta)
[ae/8191d3] Submitted process > PREPARE_GENOME:GTF2BED (genome.filtered.gtf)
Nextflow stderr:
Nextflow 24.04.4 is available - Please consider updating your version to it
Check failure on line 1 in Test Subworkflow PREPARE_GENOME
github-actions / JUnit Test Report
Test Subworkflow PREPARE_GENOME.transcriptome = false
Assertion failed:
1 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.04.2
Launching `/home/runner/work/rnaseq/rnaseq/.nf-test-3d7dfab73fd069c29caa6b71b9200264.nf` [gigantic_shaw] DSL2 - revision: 6cc6fb3913
[61/e93349] Submitted process > PREPARE_GENOME:GTF_FILTER (genome.fasta)
[10/2e182b] Submitted process > PREPARE_GENOME:CUSTOM_CATADDITIONALFASTA (null)
[47/50b43f] Submitted process > PREPARE_GENOME:MAKE_TRANSCRIPTS_FASTA (rsem/genome_gfp.fasta)
[33/be0735] Submitted process > PREPARE_GENOME:CUSTOM_GETCHROMSIZES (genome_gfp.fasta)
[18/679dac] Submitted process > PREPARE_GENOME:GTF2BED (genome_gfp.gtf)
[cc/14c435] Submitted process > PREPARE_GENOME:BBMAP_BBSPLIT (null)
Nextflow stderr:
Nextflow 24.04.4 is available - Please consider updating your version to it
Check failure on line 1 in Test Subworkflow PREPARE_GENOME
github-actions / JUnit Test Report
Test Subworkflow PREPARE_GENOME.with bed
Assertion failed:
1 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.04.2
Launching `/home/runner/work/rnaseq/rnaseq/.nf-test-a5a7980d1f5930ed4379dfb7468df662.nf` [insane_rutherford] DSL2 - revision: 91cf64590a
[87/a21295] Submitted process > PREPARE_GENOME:GTF_FILTER (genome.fasta)
[f1/268fe3] Submitted process > PREPARE_GENOME:CUSTOM_CATADDITIONALFASTA (null)
[f4/1e7ad2] Submitted process > PREPARE_GENOME:CUSTOM_GETCHROMSIZES (genome_gfp.fasta)
[b7/d3db84] Submitted process > PREPARE_GENOME:BBMAP_BBSPLIT (null)
Nextflow stderr:
Nextflow 24.04.4 is available - Please consider updating your version to it
Check failure on line 1 in Test Subworkflow PREPARE_GENOME
github-actions / JUnit Test Report
Test Subworkflow PREPARE_GENOME.rsem_index = false
Assertion failed:
1 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.04.2
Launching `/home/runner/work/rnaseq/rnaseq/.nf-test-270807ed7ba750f404689f9929cedd40.nf` [cheesy_solvay] DSL2 - revision: a0be1cf02b
[bc/c6e4a0] Submitted process > PREPARE_GENOME:GTF_FILTER (genome.fasta)
[0a/3f603e] Submitted process > PREPARE_GENOME:CUSTOM_CATADDITIONALFASTA (null)
[3c/da1a18] Submitted process > PREPARE_GENOME:GTF2BED (genome_gfp.gtf)
[2e/10099f] Submitted process > PREPARE_GENOME:CUSTOM_GETCHROMSIZES (genome_gfp.fasta)
[c8/78fb01] Submitted process > PREPARE_GENOME:BBMAP_BBSPLIT (null)
Nextflow stderr:
Nextflow 24.04.4 is available - Please consider updating your version to it
Check failure on line 1 in Test Subworkflow PREPARE_GENOME
github-actions / JUnit Test Report
Test Subworkflow PREPARE_GENOME.salmon_index = false
Assertion failed:
1 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.04.2
Launching `/home/runner/work/rnaseq/rnaseq/.nf-test-2c9dfa44f6c04cce1a94fb6c5574633f.nf` [furious_kay] DSL2 - revision: 20531b3ae1
[c8/a8ccb5] Submitted process > PREPARE_GENOME:GTF_FILTER (genome.fasta)
[ea/795e34] Submitted process > PREPARE_GENOME:CUSTOM_CATADDITIONALFASTA (null)
[f6/946195] Submitted process > PREPARE_GENOME:GTF2BED (genome_gfp.gtf)
[ad/119515] Submitted process > PREPARE_GENOME:CUSTOM_GETCHROMSIZES (genome_gfp.fasta)
[78/cdd4fe] Submitted process > PREPARE_GENOME:BBMAP_BBSPLIT (null)
Nextflow stderr:
Nextflow 24.04.4 is available - Please consider updating your version to it
Check failure on line 1 in Test Subworkflow PREPARE_GENOME
github-actions / JUnit Test Report
Test Subworkflow PREPARE_GENOME.hisat2_index = false
Assertion failed:
1 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.04.2
Launching `/home/runner/work/rnaseq/rnaseq/.nf-test-acf450e4a243876e5f395973f8895a51.nf` [lethal_laplace] DSL2 - revision: 2d29c06d62
[48/8c9af5] Submitted process > PREPARE_GENOME:GTF_FILTER (genome.fasta)
[e2/a2c922] Submitted process > PREPARE_GENOME:CUSTOM_CATADDITIONALFASTA (null)
[04/f7ab9b] Submitted process > PREPARE_GENOME:GTF2BED (genome_gfp.gtf)
[16/cbeac0] Submitted process > PREPARE_GENOME:CUSTOM_GETCHROMSIZES (genome_gfp.fasta)
[a3/5f3a50] Submitted process > PREPARE_GENOME:BBMAP_BBSPLIT (null)
Nextflow stderr:
Nextflow 24.04.4 is available - Please consider updating your version to it
Check failure on line 1 in Test Subworkflow PREPARE_GENOME
github-actions / JUnit Test Report
Test Subworkflow PREPARE_GENOME.gencode = true
Assertion failed:
1 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.04.2
Launching `/home/runner/work/rnaseq/rnaseq/.nf-test-5a326afcb0cdf6699a393b9faa27f56d.nf` [ridiculous_ampere] DSL2 - revision: 9fcbb707d7
[13/018629] Submitted process > PREPARE_GENOME:PREPROCESS_TRANSCRIPTS_FASTA_GENCODE (transcriptome.fasta)
[d7/2ac479] Submitted process > PREPARE_GENOME:GTF_FILTER (genome.fasta)
[a9/225b41] Submitted process > PREPARE_GENOME:CUSTOM_CATADDITIONALFASTA (null)
[bf/f7d931] Submitted process > PREPARE_GENOME:GTF2BED (genome_gfp.gtf)
[a1/990e2c] Submitted process > PREPARE_GENOME:CUSTOM_GETCHROMSIZES (genome_gfp.fasta)
[a6/f862e3] Submitted process > PREPARE_GENOME:BBMAP_BBSPLIT (null)
Nextflow stderr:
Nextflow 24.04.4 is available - Please consider updating your version to it
Check failure on line 1 in Test Subworkflow PREPARE_GENOME
github-actions / JUnit Test Report
Test Subworkflow PREPARE_GENOME.featurecounts_group_type = 'gene_type'
Assertion failed:
1 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.04.2
Launching `/home/runner/work/rnaseq/rnaseq/.nf-test-223d2c56c3bdbd48b1200e3e6d5486b4.nf` [goofy_church] DSL2 - revision: 4ec53411b2
[66/32741c] Submitted process > PREPARE_GENOME:GTF_FILTER (genome.fasta)
[fa/3b4c32] Submitted process > PREPARE_GENOME:CUSTOM_CATADDITIONALFASTA (null)
[98/0c1693] Submitted process > PREPARE_GENOME:GTF2BED (genome_gfp.gtf)
[e7/d04140] Submitted process > PREPARE_GENOME:CUSTOM_GETCHROMSIZES (genome_gfp.fasta)
[5a/fa0379] Submitted process > PREPARE_GENOME:BBMAP_BBSPLIT (null)
Nextflow stderr:
Nextflow 24.04.4 is available - Please consider updating your version to it
Check failure on line 1 in Test Subworkflow PREPARE_GENOME
github-actions / JUnit Test Report
Test Subworkflow PREPARE_GENOME.skip_gtf_filter = true
Assertion failed:
1 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.04.2
Launching `/home/runner/work/rnaseq/rnaseq/.nf-test-35d5b512ff1d0997b0fb586e3e322521.nf` [fervent_allen] DSL2 - revision: 7fae19767d
[24/3f5b6b] Submitted process > PREPARE_GENOME:CUSTOM_CATADDITIONALFASTA (null)
[a4/cde057] Submitted process > PREPARE_GENOME:CUSTOM_GETCHROMSIZES (genome_gfp.fasta)
[b3/529271] Submitted process > PREPARE_GENOME:GTF2BED (genome_gfp.gtf)
[72/ba4ad7] Submitted process > PREPARE_GENOME:BBMAP_BBSPLIT (null)
Nextflow stderr:
Nextflow 24.04.4 is available - Please consider updating your version to it
Check failure on line 1 in Test Subworkflow PREPARE_GENOME
github-actions / JUnit Test Report
Test Subworkflow PREPARE_GENOME.skip_bbsplit = true
Assertion failed:
1 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.04.2
Launching `/home/runner/work/rnaseq/rnaseq/.nf-test-fcd803d34450eec01f89b24ab4aab8ec.nf` [happy_magritte] DSL2 - revision: 7b440370f4
[62/8184d5] Submitted process > PREPARE_GENOME:GTF_FILTER (genome.fasta)
[dc/ebd3db] Submitted process > PREPARE_GENOME:CUSTOM_CATADDITIONALFASTA (null)
[f1/8c544c] Submitted process > PREPARE_GENOME:GTF2BED (genome_gfp.gtf)
[93/acb0fa] Submitted process > PREPARE_GENOME:CUSTOM_GETCHROMSIZES (genome_gfp.fasta)
Nextflow stderr:
Nextflow 24.04.4 is available - Please consider updating your version to it
Check failure on line 1 in Test Subworkflow PREPARE_GENOME
github-actions / JUnit Test Report
Test Subworkflow PREPARE_GENOME.skip_alignment = true
Assertion failed:
1 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.04.2
Launching `/home/runner/work/rnaseq/rnaseq/.nf-test-66bebf46f804014f4d94fadda85e3aea.nf` [admiring_pasteur] DSL2 - revision: 15679e67bc
[77/f33c1b] Submitted process > PREPARE_GENOME:GTF_FILTER (genome.fasta)
[f5/0bbe09] Submitted process > PREPARE_GENOME:CUSTOM_CATADDITIONALFASTA (null)
[7b/fbdbf4] Submitted process > PREPARE_GENOME:CUSTOM_GETCHROMSIZES (genome_gfp.fasta)
[bb/9f3253] Submitted process > PREPARE_GENOME:GTF2BED (genome_gfp.gtf)
[25/0434e2] Submitted process > PREPARE_GENOME:BBMAP_BBSPLIT (null)
Nextflow stderr:
Nextflow 24.04.4 is available - Please consider updating your version to it
Check failure on line 1 in Test Subworkflow PREPARE_GENOME
github-actions / JUnit Test Report
Test Subworkflow PREPARE_GENOME.skip_pseudoalignment = true
Assertion failed:
1 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.04.2
Launching `/home/runner/work/rnaseq/rnaseq/.nf-test-fb5ab8fb88b00de6e7db87f06483c819.nf` [thirsty_cajal] DSL2 - revision: f60bd538f1
[fb/0557d4] Submitted process > PREPARE_GENOME:GTF_FILTER (genome.fasta)
[47/bb48e5] Submitted process > PREPARE_GENOME:CUSTOM_CATADDITIONALFASTA (null)
[ab/e76072] Submitted process > PREPARE_GENOME:GTF2BED (genome_gfp.gtf)
[a2/906c53] Submitted process > PREPARE_GENOME:CUSTOM_GETCHROMSIZES (genome_gfp.fasta)
[e2/9b384d] Submitted process > PREPARE_GENOME:BBMAP_BBSPLIT (null)
Nextflow stderr:
Nextflow 24.04.4 is available - Please consider updating your version to it
Check failure on line 1 in Test Subworkflow PREPARE_GENOME
github-actions / JUnit Test Report
Test Subworkflow PREPARE_GENOME.default options - stub
Assertion failed:
1 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.04.2
Launching `/home/runner/work/rnaseq/rnaseq/.nf-test-cb19c340befee22695d1e0884023e9c7.nf` [fabulous_kare] DSL2 - revision: 58cb1b06f6
[bf/0c2c16] Submitted process > PREPARE_GENOME:GTF_FILTER (genome.fasta)
[97/de1334] Submitted process > PREPARE_GENOME:CUSTOM_CATADDITIONALFASTA (null)
[7c/bbcb4a] Submitted process > PREPARE_GENOME:GTF2BED (genome_transcriptome.gtf)
[68/f3b2f3] Submitted process > PREPARE_GENOME:CUSTOM_GETCHROMSIZES (genome_transcriptome.fasta)
[bf/f1ca83] Submitted process > PREPARE_GENOME:BBMAP_BBSPLIT (null)
Nextflow stderr:
Nextflow 24.04.4 is available - Please consider updating your version to it
Check failure on line 1 in Test Subworkflow PREPARE_GENOME
github-actions / JUnit Test Report
Test Subworkflow PREPARE_GENOME.gencode = false - stub
Assertion failed:
1 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.04.2
Launching `/home/runner/work/rnaseq/rnaseq/.nf-test-7e31db8951465e0982e92789ec953d54.nf` [sad_moriondo] DSL2 - revision: 58cb1b06f6
[ce/7b30c4] Submitted process > PREPARE_GENOME:GTF_FILTER (genome.fasta)
[b8/67a046] Submitted process > PREPARE_GENOME:CUSTOM_CATADDITIONALFASTA (null)
[17/679966] Submitted process > PREPARE_GENOME:GTF2BED (genome_transcriptome.gtf)
[a1/c6643c] Submitted process > PREPARE_GENOME:CUSTOM_GETCHROMSIZES (genome_transcriptome.fasta)
[51/ae5590] Submitted process > PREPARE_GENOME:BBMAP_BBSPLIT (null)
Nextflow stderr:
Nextflow 24.04.4 is available - Please consider updating your version to it
Check failure on line 1 in Test Subworkflow PREPARE_GENOME
github-actions / JUnit Test Report
Test Subworkflow PREPARE_GENOME.skip_gtf_filter - stub
Assertion failed:
1 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.04.2
Launching `/home/runner/work/rnaseq/rnaseq/.nf-test-56b225c2ec3f38cee755aac78e120b69.nf` [romantic_swirles] DSL2 - revision: 7fae19767d
[4c/d3a5b4] Submitted process > PREPARE_GENOME:CUSTOM_CATADDITIONALFASTA (null)
[d8/ca70bc] Submitted process > PREPARE_GENOME:GTF2BED (genome_transcriptome.gtf)
[bc/df9e76] Submitted process > PREPARE_GENOME:CUSTOM_GETCHROMSIZES (genome_transcriptome.fasta)
[31/176717] Submitted process > PREPARE_GENOME:BBMAP_BBSPLIT (null)
Nextflow stderr:
Nextflow 24.04.4 is available - Please consider updating your version to it
Check failure on line 1 in Test Subworkflow PREPARE_GENOME
github-actions / JUnit Test Report
Test Subworkflow PREPARE_GENOME.skip_bbsplit - stub
Assertion failed:
1 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.04.2
Launching `/home/runner/work/rnaseq/rnaseq/.nf-test-83dd331574790256e72e5c103bc5379d.nf` [romantic_morse] DSL2 - revision: 7b440370f4
[3f/54620a] Submitted process > PREPARE_GENOME:GTF_FILTER (genome.fasta)
[dc/2d6e1c] Submitted process > PREPARE_GENOME:CUSTOM_CATADDITIONALFASTA (null)
[45/77d0d4] Submitted process > PREPARE_GENOME:GTF2BED (genome_transcriptome.gtf)
[2d/3df187] Submitted process > PREPARE_GENOME:CUSTOM_GETCHROMSIZES (genome_transcriptome.fasta)
Nextflow stderr:
Nextflow 24.04.4 is available - Please consider updating your version to it
Check failure on line 1 in Test Subworkflow PREPARE_GENOME
github-actions / JUnit Test Report
Test Subworkflow PREPARE_GENOME.skip_alignment - stub
Assertion failed:
1 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.04.2
Launching `/home/runner/work/rnaseq/rnaseq/.nf-test-1a8315886038f3425e1f2afdb7212f32.nf` [voluminous_varahamihira] DSL2 - revision: 15679e67bc
[b1/8aebba] Submitted process > PREPARE_GENOME:GTF_FILTER (genome.fasta)
[75/bd27f0] Submitted process > PREPARE_GENOME:CUSTOM_CATADDITIONALFASTA (null)
[ab/cf9b39] Submitted process > PREPARE_GENOME:GTF2BED (genome_transcriptome.gtf)
[e7/62c7de] Submitted process > PREPARE_GENOME:CUSTOM_GETCHROMSIZES (genome_transcriptome.fasta)
[df/484028] Submitted process > PREPARE_GENOME:BBMAP_BBSPLIT (null)
Nextflow stderr:
Nextflow 24.04.4 is available - Please consider updating your version to it