Bump lots of modules so that conda versions have arm builds #46
4 tests run, 0 passed, 0 skipped, 4 failed.
Annotations
Check failure on line 1 in Test Workflow BAM_MARKDUPLICATES_PICARD
github-actions / JUnit Test Report
Test Workflow BAM_MARKDUPLICATES_PICARD.sarscov2 - bam
Assertion failed:
1 of 3 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.04.2
Launching `/home/runner/work/rnaseq/rnaseq/.nf-test-ed3ae0039a3d9e2b3fbee1c0906fef39.nf` [awesome_laplace] DSL2 - revision: 95cc5135c4
Downloading plugin [email protected]
Downloading plugin [email protected]
[a7/e26aaf] Submitted process > BAM_MARKDUPLICATES_PICARD:PICARD_MARKDUPLICATES (test)
[9f/00bb80] Submitted process > BAM_MARKDUPLICATES_PICARD:SAMTOOLS_INDEX (test)
[af/94d429] Submitted process > BAM_MARKDUPLICATES_PICARD:BAM_STATS_SAMTOOLS:SAMTOOLS_IDXSTATS (test)
[f9/8bbd4e] Submitted process > BAM_MARKDUPLICATES_PICARD:BAM_STATS_SAMTOOLS:SAMTOOLS_FLAGSTAT (test)
[55/e8fc3e] Submitted process > BAM_MARKDUPLICATES_PICARD:BAM_STATS_SAMTOOLS:SAMTOOLS_STATS (test)
Nextflow stderr:
Nextflow 24.04.4 is available - Please consider updating your version to it
Check failure on line 1 in Test Workflow BAM_MARKDUPLICATES_PICARD
github-actions / JUnit Test Report
Test Workflow BAM_MARKDUPLICATES_PICARD.homo_sapiens - cram
Assertion failed:
1 of 3 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.04.2
Launching `/home/runner/work/rnaseq/rnaseq/.nf-test-82757110b0aaafc41d47633f05672bd1.nf` [berserk_dalembert] DSL2 - revision: 1babce2ecb
[92/eada59] Submitted process > BAM_MARKDUPLICATES_PICARD:PICARD_MARKDUPLICATES (test)
[33/3e7f87] Submitted process > BAM_MARKDUPLICATES_PICARD:SAMTOOLS_INDEX (test)
[02/f5efd0] Submitted process > BAM_MARKDUPLICATES_PICARD:BAM_STATS_SAMTOOLS:SAMTOOLS_IDXSTATS (test)
[7d/910099] Submitted process > BAM_MARKDUPLICATES_PICARD:BAM_STATS_SAMTOOLS:SAMTOOLS_FLAGSTAT (test)
[8f/47cf61] Submitted process > BAM_MARKDUPLICATES_PICARD:BAM_STATS_SAMTOOLS:SAMTOOLS_STATS (test)
Nextflow stderr:
Nextflow 24.04.4 is available - Please consider updating your version to it
Check failure on line 1 in Test Workflow BAM_MARKDUPLICATES_PICARD
github-actions / JUnit Test Report
Test Workflow BAM_MARKDUPLICATES_PICARD.sarscov2 - bam - stub
Assertion failed:
1 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.04.2
Launching `/home/runner/work/rnaseq/rnaseq/.nf-test-58c80f9ef948d66ef0babcd4d345bbd7.nf` [confident_lamarr] DSL2 - revision: 95cc5135c4
[88/a2338b] Submitted process > BAM_MARKDUPLICATES_PICARD:PICARD_MARKDUPLICATES (test)
[be/68f5e7] Submitted process > BAM_MARKDUPLICATES_PICARD:SAMTOOLS_INDEX (test)
[b2/fed3d9] Submitted process > BAM_MARKDUPLICATES_PICARD:BAM_STATS_SAMTOOLS:SAMTOOLS_IDXSTATS (test)
[7f/583ec9] Submitted process > BAM_MARKDUPLICATES_PICARD:BAM_STATS_SAMTOOLS:SAMTOOLS_FLAGSTAT (test)
[51/54ff1b] Submitted process > BAM_MARKDUPLICATES_PICARD:BAM_STATS_SAMTOOLS:SAMTOOLS_STATS (test)
Nextflow stderr:
Nextflow 24.04.4 is available - Please consider updating your version to it
Check failure on line 1 in Test Workflow BAM_MARKDUPLICATES_PICARD
github-actions / JUnit Test Report
Test Workflow BAM_MARKDUPLICATES_PICARD.homo_sapiens - cram - stub
Assertion failed:
1 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.04.2
Launching `/home/runner/work/rnaseq/rnaseq/.nf-test-9657badae44b931a24bc1176e89fd5fb.nf` [disturbed_faggin] DSL2 - revision: 1babce2ecb
[45/d677cf] Submitted process > BAM_MARKDUPLICATES_PICARD:PICARD_MARKDUPLICATES (test)
[f2/676ff3] Submitted process > BAM_MARKDUPLICATES_PICARD:SAMTOOLS_INDEX (test)
[31/690436] Submitted process > BAM_MARKDUPLICATES_PICARD:BAM_STATS_SAMTOOLS:SAMTOOLS_IDXSTATS (test)
[58/33cd0a] Submitted process > BAM_MARKDUPLICATES_PICARD:BAM_STATS_SAMTOOLS:SAMTOOLS_FLAGSTAT (test)
[cb/2bd8ce] Submitted process > BAM_MARKDUPLICATES_PICARD:BAM_STATS_SAMTOOLS:SAMTOOLS_STATS (test)
Nextflow stderr:
Nextflow 24.04.4 is available - Please consider updating your version to it