Bump lots of modules so that conda versions have arm builds #46
4 tests run, 0 passed, 0 skipped, 4 failed.
Annotations
Check failure on line 1 in Test Workflow BAM_MARKDUPLICATES_PICARD
github-actions / JUnit Test Report
Test Workflow BAM_MARKDUPLICATES_PICARD.sarscov2 - bam
Assertion failed:
1 of 3 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.04.2
Launching `/home/runner/work/rnaseq/rnaseq/.nf-test-ed3ae0039a3d9e2b3fbee1c0906fef39.nf` [silly_morse] DSL2 - revision: 95cc5135c4
Downloading plugin [email protected]
Downloading plugin [email protected]
[28/cd9a3d] Submitted process > BAM_MARKDUPLICATES_PICARD:PICARD_MARKDUPLICATES (test)
[ab/d776ea] Submitted process > BAM_MARKDUPLICATES_PICARD:SAMTOOLS_INDEX (test)
[73/cb4493] Submitted process > BAM_MARKDUPLICATES_PICARD:BAM_STATS_SAMTOOLS:SAMTOOLS_IDXSTATS (test)
[17/0d6036] Submitted process > BAM_MARKDUPLICATES_PICARD:BAM_STATS_SAMTOOLS:SAMTOOLS_FLAGSTAT (test)
[52/a22b44] Submitted process > BAM_MARKDUPLICATES_PICARD:BAM_STATS_SAMTOOLS:SAMTOOLS_STATS (test)
Nextflow stderr:
Nextflow 24.04.4 is available - Please consider updating your version to it
Check failure on line 1 in Test Workflow BAM_MARKDUPLICATES_PICARD
github-actions / JUnit Test Report
Test Workflow BAM_MARKDUPLICATES_PICARD.homo_sapiens - cram
Assertion failed:
1 of 3 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.04.2
Launching `/home/runner/work/rnaseq/rnaseq/.nf-test-82757110b0aaafc41d47633f05672bd1.nf` [distraught_lattes] DSL2 - revision: 1babce2ecb
[c0/d7c459] Submitted process > BAM_MARKDUPLICATES_PICARD:PICARD_MARKDUPLICATES (test)
[26/d4d34b] Submitted process > BAM_MARKDUPLICATES_PICARD:SAMTOOLS_INDEX (test)
[90/3e0309] Submitted process > BAM_MARKDUPLICATES_PICARD:BAM_STATS_SAMTOOLS:SAMTOOLS_IDXSTATS (test)
[34/e845f3] Submitted process > BAM_MARKDUPLICATES_PICARD:BAM_STATS_SAMTOOLS:SAMTOOLS_FLAGSTAT (test)
[a9/954d5e] Submitted process > BAM_MARKDUPLICATES_PICARD:BAM_STATS_SAMTOOLS:SAMTOOLS_STATS (test)
Nextflow stderr:
Nextflow 24.04.4 is available - Please consider updating your version to it
Check failure on line 1 in Test Workflow BAM_MARKDUPLICATES_PICARD
github-actions / JUnit Test Report
Test Workflow BAM_MARKDUPLICATES_PICARD.sarscov2 - bam - stub
Assertion failed:
1 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.04.2
Launching `/home/runner/work/rnaseq/rnaseq/.nf-test-58c80f9ef948d66ef0babcd4d345bbd7.nf` [distraught_celsius] DSL2 - revision: 95cc5135c4
[6e/bcef91] Submitted process > BAM_MARKDUPLICATES_PICARD:PICARD_MARKDUPLICATES (test)
[bc/58bd02] Submitted process > BAM_MARKDUPLICATES_PICARD:SAMTOOLS_INDEX (test)
[b8/b5b2d0] Submitted process > BAM_MARKDUPLICATES_PICARD:BAM_STATS_SAMTOOLS:SAMTOOLS_FLAGSTAT (test)
[d1/358e2e] Submitted process > BAM_MARKDUPLICATES_PICARD:BAM_STATS_SAMTOOLS:SAMTOOLS_IDXSTATS (test)
[44/4df880] Submitted process > BAM_MARKDUPLICATES_PICARD:BAM_STATS_SAMTOOLS:SAMTOOLS_STATS (test)
Nextflow stderr:
Nextflow 24.04.4 is available - Please consider updating your version to it
Check failure on line 1 in Test Workflow BAM_MARKDUPLICATES_PICARD
github-actions / JUnit Test Report
Test Workflow BAM_MARKDUPLICATES_PICARD.homo_sapiens - cram - stub
Assertion failed:
1 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.04.2
Launching `/home/runner/work/rnaseq/rnaseq/.nf-test-9657badae44b931a24bc1176e89fd5fb.nf` [tiny_picasso] DSL2 - revision: 1babce2ecb
[5a/ddf4c2] Submitted process > BAM_MARKDUPLICATES_PICARD:PICARD_MARKDUPLICATES (test)
[48/52456a] Submitted process > BAM_MARKDUPLICATES_PICARD:SAMTOOLS_INDEX (test)
[b1/73622c] Submitted process > BAM_MARKDUPLICATES_PICARD:BAM_STATS_SAMTOOLS:SAMTOOLS_FLAGSTAT (test)
[fd/72e76f] Submitted process > BAM_MARKDUPLICATES_PICARD:BAM_STATS_SAMTOOLS:SAMTOOLS_IDXSTATS (test)
[00/c67ee0] Submitted process > BAM_MARKDUPLICATES_PICARD:BAM_STATS_SAMTOOLS:SAMTOOLS_STATS (test)
Nextflow stderr:
Nextflow 24.04.4 is available - Please consider updating your version to it