Bump lots of modules so that conda versions have arm builds #46
40 tests run, 0 passed, 0 skipped, 40 failed.
Annotations
Check failure on line 1 in Test Subworkflow PREPARE_GENOME
github-actions / JUnit Test Report
Test Subworkflow PREPARE_GENOME.default options
Assertion failed:
1 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.04.2
Launching `/home/runner/work/rnaseq/rnaseq/.nf-test-640affe0a1cb8973a6782fa01cd6d78.nf` [sharp_visvesvaraya] DSL2 - revision: 58cb1b06f6
Downloading plugin [email protected]
Downloading plugin [email protected]
[4e/79142e] Submitted process > PREPARE_GENOME:GTF_FILTER (genome.fasta)
[46/3700ef] Submitted process > PREPARE_GENOME:CUSTOM_CATADDITIONALFASTA (null)
[f4/c8cc68] Submitted process > PREPARE_GENOME:CUSTOM_GETCHROMSIZES (genome_gfp.fasta)
[e5/38af59] Submitted process > PREPARE_GENOME:GTF2BED (genome_gfp.gtf)
[f7/1e9649] Submitted process > PREPARE_GENOME:BBMAP_BBSPLIT (null)
Nextflow stderr:
Nextflow 24.04.4 is available - Please consider updating your version to it
Check failure on line 1 in Test Subworkflow PREPARE_GENOME
github-actions / JUnit Test Report
Test Subworkflow PREPARE_GENOME.gencode = false
Assertion failed:
1 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.04.2
Launching `/home/runner/work/rnaseq/rnaseq/.nf-test-fee9f28f43ac32ff0cfd1777afb06410.nf` [boring_hilbert] DSL2 - revision: 58cb1b06f6
[af/9ec08a] Submitted process > PREPARE_GENOME:GTF_FILTER (genome.fasta)
[16/3f9c05] Submitted process > PREPARE_GENOME:CUSTOM_CATADDITIONALFASTA (null)
[64/fa82f0] Submitted process > PREPARE_GENOME:GTF2BED (genome_gfp.gtf)
[f2/c1ae9d] Submitted process > PREPARE_GENOME:CUSTOM_GETCHROMSIZES (genome_gfp.fasta)
[61/d14847] Submitted process > PREPARE_GENOME:BBMAP_BBSPLIT (null)
Nextflow stderr:
Nextflow 24.04.4 is available - Please consider updating your version to it
Check failure on line 1 in Test Subworkflow PREPARE_GENOME
github-actions / JUnit Test Report
Test Subworkflow PREPARE_GENOME.skip_gtf_filter
Assertion failed:
1 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.04.2
Launching `/home/runner/work/rnaseq/rnaseq/.nf-test-ddb6453b557df370ed53d11b17893ba5.nf` [high_galileo] DSL2 - revision: 7fae19767d
[e9/ddc374] Submitted process > PREPARE_GENOME:CUSTOM_CATADDITIONALFASTA (null)
[65/a11e09] Submitted process > PREPARE_GENOME:GTF2BED (genome_gfp.gtf)
[d0/b82889] Submitted process > PREPARE_GENOME:CUSTOM_GETCHROMSIZES (genome_gfp.fasta)
[a1/06a8b8] Submitted process > PREPARE_GENOME:BBMAP_BBSPLIT (null)
Nextflow stderr:
Nextflow 24.04.4 is available - Please consider updating your version to it
Check failure on line 1 in Test Subworkflow PREPARE_GENOME
github-actions / JUnit Test Report
Test Subworkflow PREPARE_GENOME.skip_bbsplit
Assertion failed:
1 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.04.2
Launching `/home/runner/work/rnaseq/rnaseq/.nf-test-45adf83fc482b2dcc3761b2644bad943.nf` [marvelous_raman] DSL2 - revision: 7b440370f4
[18/11849d] Submitted process > PREPARE_GENOME:GTF_FILTER (genome.fasta)
[d2/17c7fc] Submitted process > PREPARE_GENOME:CUSTOM_CATADDITIONALFASTA (null)
[56/4a70fa] Submitted process > PREPARE_GENOME:GTF2BED (genome_gfp.gtf)
[54/641d83] Submitted process > PREPARE_GENOME:CUSTOM_GETCHROMSIZES (genome_gfp.fasta)
Nextflow stderr:
Nextflow 24.04.4 is available - Please consider updating your version to it
Check failure on line 1 in Test Subworkflow PREPARE_GENOME
github-actions / JUnit Test Report
Test Subworkflow PREPARE_GENOME.skip_alignment
Assertion failed:
1 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.04.2
Launching `/home/runner/work/rnaseq/rnaseq/.nf-test-6df1e190828956928df40c7201f2df4d.nf` [cranky_mercator] DSL2 - revision: 15679e67bc
[99/8f1a29] Submitted process > PREPARE_GENOME:GTF_FILTER (genome.fasta)
[70/93ff40] Submitted process > PREPARE_GENOME:CUSTOM_CATADDITIONALFASTA (null)
[b4/24997c] Submitted process > PREPARE_GENOME:GTF2BED (genome_gfp.gtf)
[37/8ebf5f] Submitted process > PREPARE_GENOME:CUSTOM_GETCHROMSIZES (genome_gfp.fasta)
[27/7d422f] Submitted process > PREPARE_GENOME:BBMAP_BBSPLIT (null)
Nextflow stderr:
Nextflow 24.04.4 is available - Please consider updating your version to it
Check failure on line 1 in Test Subworkflow PREPARE_GENOME
github-actions / JUnit Test Report
Test Subworkflow PREPARE_GENOME.skip_pseudo_alignment
Assertion failed:
1 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.04.2
Launching `/home/runner/work/rnaseq/rnaseq/.nf-test-e55d6879442cae099ed51d5836af78f0.nf` [festering_liskov] DSL2 - revision: f60bd538f1
[62/88603d] Submitted process > PREPARE_GENOME:GTF_FILTER (genome.fasta)
[24/c851c6] Submitted process > PREPARE_GENOME:CUSTOM_CATADDITIONALFASTA (null)
[b8/c40440] Submitted process > PREPARE_GENOME:CUSTOM_GETCHROMSIZES (genome_gfp.fasta)
[c6/d8420a] Submitted process > PREPARE_GENOME:GTF2BED (genome_gfp.gtf)
[cd/53a1a2] Submitted process > PREPARE_GENOME:BBMAP_BBSPLIT (null)
Nextflow stderr:
Nextflow 24.04.4 is available - Please consider updating your version to it
Check failure on line 1 in Test Subworkflow PREPARE_GENOME
github-actions / JUnit Test Report
Test Subworkflow PREPARE_GENOME.gtf = false
Assertion failed:
1 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.04.2
Launching `/home/runner/work/rnaseq/rnaseq/.nf-test-99281af93c7b431e548a22c7c69cf8b0.nf` [maniac_cajal] DSL2 - revision: 86ce425be1
[f5/98a26a] Submitted process > PREPARE_GENOME:GFFREAD (null)
[88/81b171] Submitted process > PREPARE_GENOME:PREPROCESS_TRANSCRIPTS_FASTA_GENCODE (transcriptome.fasta)
[af/8c572e] Submitted process > PREPARE_GENOME:GTF_FILTER (genome.fasta)
[95/c4e0ff] Submitted process > PREPARE_GENOME:CUSTOM_CATADDITIONALFASTA (null)
[9b/1a05d6] Submitted process > PREPARE_GENOME:GTF2BED (genome_gfp.gtf)
[d7/707ad9] Submitted process > PREPARE_GENOME:CUSTOM_GETCHROMSIZES (genome_gfp.fasta)
[b5/669362] Submitted process > PREPARE_GENOME:BBMAP_BBSPLIT (null)
Nextflow stderr:
Nextflow 24.04.4 is available - Please consider updating your version to it
Check failure on line 1 in Test Subworkflow PREPARE_GENOME
github-actions / JUnit Test Report
Test Subworkflow PREPARE_GENOME.gff = false
Assertion failed:
1 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.04.2
Launching `/home/runner/work/rnaseq/rnaseq/.nf-test-fdd951cda87b113761f9bf37454ef2c.nf` [zen_engelbart] DSL2 - revision: e517c50d3b
[4a/b82f7d] Submitted process > PREPARE_GENOME:GTF_FILTER (genome.fasta)
[af/8249f5] Submitted process > PREPARE_GENOME:CUSTOM_CATADDITIONALFASTA (null)
[24/e89391] Submitted process > PREPARE_GENOME:GTF2BED (genome_gfp.gtf)
[56/222267] Submitted process > PREPARE_GENOME:CUSTOM_GETCHROMSIZES (genome_gfp.fasta)
[72/ce3f3d] Submitted process > PREPARE_GENOME:BBMAP_BBSPLIT (null)
Nextflow stderr:
Nextflow 24.04.4 is available - Please consider updating your version to it
Check failure on line 1 in Test Subworkflow PREPARE_GENOME
github-actions / JUnit Test Report
Test Subworkflow PREPARE_GENOME.gfp = false
Assertion failed:
1 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.04.2
Launching `/home/runner/work/rnaseq/rnaseq/.nf-test-5e76b1622f3e89214ac015068690bb08.nf` [tiny_linnaeus] DSL2 - revision: 1d12e6b471
[86/9023ca] Submitted process > PREPARE_GENOME:CUSTOM_GETCHROMSIZES (genome.fasta)
[2e/c2c415] Submitted process > PREPARE_GENOME:BBMAP_BBSPLIT (null)
[52/845ad1] Submitted process > PREPARE_GENOME:GTF_FILTER (genome.fasta)
[f3/e6046b] Submitted process > PREPARE_GENOME:GTF2BED (genome.filtered.gtf)
Nextflow stderr:
Nextflow 24.04.4 is available - Please consider updating your version to it
Check failure on line 1 in Test Subworkflow PREPARE_GENOME
github-actions / JUnit Test Report
Test Subworkflow PREPARE_GENOME.transcriptome = false
Assertion failed:
1 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.04.2
Launching `/home/runner/work/rnaseq/rnaseq/.nf-test-3d7dfab73fd069c29caa6b71b9200264.nf` [ridiculous_gates] DSL2 - revision: 6cc6fb3913
[05/226cbc] Submitted process > PREPARE_GENOME:GTF_FILTER (genome.fasta)
[7d/e23bb0] Submitted process > PREPARE_GENOME:CUSTOM_CATADDITIONALFASTA (null)
[24/b68f07] Submitted process > PREPARE_GENOME:MAKE_TRANSCRIPTS_FASTA (rsem/genome_gfp.fasta)
[48/70bdec] Submitted process > PREPARE_GENOME:GTF2BED (genome_gfp.gtf)
[01/28d76b] Submitted process > PREPARE_GENOME:CUSTOM_GETCHROMSIZES (genome_gfp.fasta)
[8f/9288d8] Submitted process > PREPARE_GENOME:BBMAP_BBSPLIT (null)
Nextflow stderr:
Nextflow 24.04.4 is available - Please consider updating your version to it
Check failure on line 1 in Test Subworkflow PREPARE_GENOME
github-actions / JUnit Test Report
Test Subworkflow PREPARE_GENOME.with bed
Assertion failed:
1 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.04.2
Launching `/home/runner/work/rnaseq/rnaseq/.nf-test-a5a7980d1f5930ed4379dfb7468df662.nf` [cranky_murdock] DSL2 - revision: 91cf64590a
[48/07f131] Submitted process > PREPARE_GENOME:GTF_FILTER (genome.fasta)
[19/ac06cf] Submitted process > PREPARE_GENOME:CUSTOM_CATADDITIONALFASTA (null)
[49/9f1a4f] Submitted process > PREPARE_GENOME:CUSTOM_GETCHROMSIZES (genome_gfp.fasta)
[58/e724f0] Submitted process > PREPARE_GENOME:BBMAP_BBSPLIT (null)
Nextflow stderr:
Nextflow 24.04.4 is available - Please consider updating your version to it
Check failure on line 1 in Test Subworkflow PREPARE_GENOME
github-actions / JUnit Test Report
Test Subworkflow PREPARE_GENOME.rsem_index = false
Assertion failed:
1 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.04.2
Launching `/home/runner/work/rnaseq/rnaseq/.nf-test-270807ed7ba750f404689f9929cedd40.nf` [nauseous_archimedes] DSL2 - revision: a0be1cf02b
[6c/0a902a] Submitted process > PREPARE_GENOME:GTF_FILTER (genome.fasta)
[0e/fb5ce8] Submitted process > PREPARE_GENOME:CUSTOM_CATADDITIONALFASTA (null)
[b0/98b948] Submitted process > PREPARE_GENOME:CUSTOM_GETCHROMSIZES (genome_gfp.fasta)
[72/679e24] Submitted process > PREPARE_GENOME:GTF2BED (genome_gfp.gtf)
[c6/83b2de] Submitted process > PREPARE_GENOME:BBMAP_BBSPLIT (null)
Nextflow stderr:
Nextflow 24.04.4 is available - Please consider updating your version to it
Check failure on line 1 in Test Subworkflow PREPARE_GENOME
github-actions / JUnit Test Report
Test Subworkflow PREPARE_GENOME.salmon_index = false
Assertion failed:
1 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.04.2
Launching `/home/runner/work/rnaseq/rnaseq/.nf-test-2c9dfa44f6c04cce1a94fb6c5574633f.nf` [high_bell] DSL2 - revision: 20531b3ae1
[b3/b0ec47] Submitted process > PREPARE_GENOME:GTF_FILTER (genome.fasta)
[ae/d7330a] Submitted process > PREPARE_GENOME:CUSTOM_CATADDITIONALFASTA (null)
[3c/54459c] Submitted process > PREPARE_GENOME:GTF2BED (genome_gfp.gtf)
[35/92c46e] Submitted process > PREPARE_GENOME:CUSTOM_GETCHROMSIZES (genome_gfp.fasta)
[8a/ee4004] Submitted process > PREPARE_GENOME:BBMAP_BBSPLIT (null)
Nextflow stderr:
Nextflow 24.04.4 is available - Please consider updating your version to it
Check failure on line 1 in Test Subworkflow PREPARE_GENOME
github-actions / JUnit Test Report
Test Subworkflow PREPARE_GENOME.hisat2_index = false
Assertion failed:
1 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.04.2
Launching `/home/runner/work/rnaseq/rnaseq/.nf-test-acf450e4a243876e5f395973f8895a51.nf` [berserk_woese] DSL2 - revision: 2d29c06d62
[06/f46edb] Submitted process > PREPARE_GENOME:GTF_FILTER (genome.fasta)
[64/c9be14] Submitted process > PREPARE_GENOME:CUSTOM_CATADDITIONALFASTA (null)
[1d/edda83] Submitted process > PREPARE_GENOME:GTF2BED (genome_gfp.gtf)
[c9/f82891] Submitted process > PREPARE_GENOME:CUSTOM_GETCHROMSIZES (genome_gfp.fasta)
[4c/b04b2e] Submitted process > PREPARE_GENOME:BBMAP_BBSPLIT (null)
Nextflow stderr:
Nextflow 24.04.4 is available - Please consider updating your version to it
Check failure on line 1 in Test Subworkflow PREPARE_GENOME
github-actions / JUnit Test Report
Test Subworkflow PREPARE_GENOME.gencode = true
Assertion failed:
1 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.04.2
Launching `/home/runner/work/rnaseq/rnaseq/.nf-test-5a326afcb0cdf6699a393b9faa27f56d.nf` [loquacious_lichterman] DSL2 - revision: 9fcbb707d7
[ba/89b5a0] Submitted process > PREPARE_GENOME:PREPROCESS_TRANSCRIPTS_FASTA_GENCODE (transcriptome.fasta)
[bb/8d5d63] Submitted process > PREPARE_GENOME:GTF_FILTER (genome.fasta)
[5d/71189c] Submitted process > PREPARE_GENOME:CUSTOM_CATADDITIONALFASTA (null)
[4a/2f009d] Submitted process > PREPARE_GENOME:CUSTOM_GETCHROMSIZES (genome_gfp.fasta)
[ec/235850] Submitted process > PREPARE_GENOME:GTF2BED (genome_gfp.gtf)
[1a/a7ea0c] Submitted process > PREPARE_GENOME:BBMAP_BBSPLIT (null)
Nextflow stderr:
Nextflow 24.04.4 is available - Please consider updating your version to it
Check failure on line 1 in Test Subworkflow PREPARE_GENOME
github-actions / JUnit Test Report
Test Subworkflow PREPARE_GENOME.featurecounts_group_type = 'gene_type'
Assertion failed:
1 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.04.2
Launching `/home/runner/work/rnaseq/rnaseq/.nf-test-223d2c56c3bdbd48b1200e3e6d5486b4.nf` [lethal_pasteur] DSL2 - revision: 4ec53411b2
[1e/d294c7] Submitted process > PREPARE_GENOME:GTF_FILTER (genome.fasta)
[f8/905203] Submitted process > PREPARE_GENOME:CUSTOM_CATADDITIONALFASTA (null)
[67/a37264] Submitted process > PREPARE_GENOME:CUSTOM_GETCHROMSIZES (genome_gfp.fasta)
[f3/cdb58d] Submitted process > PREPARE_GENOME:GTF2BED (genome_gfp.gtf)
[21/3b955b] Submitted process > PREPARE_GENOME:BBMAP_BBSPLIT (null)
Nextflow stderr:
Nextflow 24.04.4 is available - Please consider updating your version to it
Check failure on line 1 in Test Subworkflow PREPARE_GENOME
github-actions / JUnit Test Report
Test Subworkflow PREPARE_GENOME.skip_gtf_filter = true
Assertion failed:
1 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.04.2
Launching `/home/runner/work/rnaseq/rnaseq/.nf-test-35d5b512ff1d0997b0fb586e3e322521.nf` [distracted_curie] DSL2 - revision: 7fae19767d
[82/640a63] Submitted process > PREPARE_GENOME:CUSTOM_CATADDITIONALFASTA (null)
[f2/84b551] Submitted process > PREPARE_GENOME:CUSTOM_GETCHROMSIZES (genome_gfp.fasta)
[9a/0010c1] Submitted process > PREPARE_GENOME:GTF2BED (genome_gfp.gtf)
[c8/ae40eb] Submitted process > PREPARE_GENOME:BBMAP_BBSPLIT (null)
Nextflow stderr:
Nextflow 24.04.4 is available - Please consider updating your version to it
Check failure on line 1 in Test Subworkflow PREPARE_GENOME
github-actions / JUnit Test Report
Test Subworkflow PREPARE_GENOME.skip_bbsplit = true
Assertion failed:
1 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.04.2
Launching `/home/runner/work/rnaseq/rnaseq/.nf-test-fcd803d34450eec01f89b24ab4aab8ec.nf` [amazing_jang] DSL2 - revision: 7b440370f4
[16/2c6072] Submitted process > PREPARE_GENOME:GTF_FILTER (genome.fasta)
[05/6006b8] Submitted process > PREPARE_GENOME:CUSTOM_CATADDITIONALFASTA (null)
[c2/9b7ead] Submitted process > PREPARE_GENOME:CUSTOM_GETCHROMSIZES (genome_gfp.fasta)
[19/057279] Submitted process > PREPARE_GENOME:GTF2BED (genome_gfp.gtf)
Nextflow stderr:
Nextflow 24.04.4 is available - Please consider updating your version to it
Check failure on line 1 in Test Subworkflow PREPARE_GENOME
github-actions / JUnit Test Report
Test Subworkflow PREPARE_GENOME.skip_alignment = true
Assertion failed:
1 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.04.2
Launching `/home/runner/work/rnaseq/rnaseq/.nf-test-66bebf46f804014f4d94fadda85e3aea.nf` [clever_almeida] DSL2 - revision: 15679e67bc
[78/2dd6c6] Submitted process > PREPARE_GENOME:GTF_FILTER (genome.fasta)
[d9/7c5fb6] Submitted process > PREPARE_GENOME:CUSTOM_CATADDITIONALFASTA (null)
[6c/b9fdf9] Submitted process > PREPARE_GENOME:GTF2BED (genome_gfp.gtf)
[17/7717bc] Submitted process > PREPARE_GENOME:CUSTOM_GETCHROMSIZES (genome_gfp.fasta)
[a5/8b2e7d] Submitted process > PREPARE_GENOME:BBMAP_BBSPLIT (null)
Nextflow stderr:
Nextflow 24.04.4 is available - Please consider updating your version to it
Check failure on line 1 in Test Subworkflow PREPARE_GENOME
github-actions / JUnit Test Report
Test Subworkflow PREPARE_GENOME.skip_pseudoalignment = true
Assertion failed:
1 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.04.2
Launching `/home/runner/work/rnaseq/rnaseq/.nf-test-fb5ab8fb88b00de6e7db87f06483c819.nf` [astonishing_crick] DSL2 - revision: f60bd538f1
[83/f288db] Submitted process > PREPARE_GENOME:GTF_FILTER (genome.fasta)
[44/1b0085] Submitted process > PREPARE_GENOME:CUSTOM_CATADDITIONALFASTA (null)
[82/547356] Submitted process > PREPARE_GENOME:GTF2BED (genome_gfp.gtf)
[5c/3fe93b] Submitted process > PREPARE_GENOME:CUSTOM_GETCHROMSIZES (genome_gfp.fasta)
[66/471d23] Submitted process > PREPARE_GENOME:BBMAP_BBSPLIT (null)
Nextflow stderr:
Nextflow 24.04.4 is available - Please consider updating your version to it
Check failure on line 1 in Test Subworkflow PREPARE_GENOME
github-actions / JUnit Test Report
Test Subworkflow PREPARE_GENOME.default options - stub
Assertion failed:
1 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.04.2
Launching `/home/runner/work/rnaseq/rnaseq/.nf-test-cb19c340befee22695d1e0884023e9c7.nf` [irreverent_albattani] DSL2 - revision: 58cb1b06f6
[c4/e98fad] Submitted process > PREPARE_GENOME:GTF_FILTER (genome.fasta)
[3f/8ef2b2] Submitted process > PREPARE_GENOME:CUSTOM_CATADDITIONALFASTA (null)
[01/878373] Submitted process > PREPARE_GENOME:GTF2BED (genome_transcriptome.gtf)
[8a/4d63ed] Submitted process > PREPARE_GENOME:CUSTOM_GETCHROMSIZES (genome_transcriptome.fasta)
[55/7dd6b2] Submitted process > PREPARE_GENOME:BBMAP_BBSPLIT (null)
Nextflow stderr:
Nextflow 24.04.4 is available - Please consider updating your version to it
Check failure on line 1 in Test Subworkflow PREPARE_GENOME
github-actions / JUnit Test Report
Test Subworkflow PREPARE_GENOME.gencode = false - stub
Assertion failed:
1 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.04.2
Launching `/home/runner/work/rnaseq/rnaseq/.nf-test-7e31db8951465e0982e92789ec953d54.nf` [nasty_noether] DSL2 - revision: 58cb1b06f6
[bc/f19615] Submitted process > PREPARE_GENOME:GTF_FILTER (genome.fasta)
[74/6d61b3] Submitted process > PREPARE_GENOME:CUSTOM_CATADDITIONALFASTA (null)
[45/777613] Submitted process > PREPARE_GENOME:GTF2BED (genome_transcriptome.gtf)
[42/a1333b] Submitted process > PREPARE_GENOME:CUSTOM_GETCHROMSIZES (genome_transcriptome.fasta)
[e7/028cb1] Submitted process > PREPARE_GENOME:BBMAP_BBSPLIT (null)
Nextflow stderr:
Nextflow 24.04.4 is available - Please consider updating your version to it
Check failure on line 1 in Test Subworkflow PREPARE_GENOME
github-actions / JUnit Test Report
Test Subworkflow PREPARE_GENOME.skip_gtf_filter - stub
Assertion failed:
1 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.04.2
Launching `/home/runner/work/rnaseq/rnaseq/.nf-test-56b225c2ec3f38cee755aac78e120b69.nf` [prickly_almeida] DSL2 - revision: 7fae19767d
[e5/cdbd16] Submitted process > PREPARE_GENOME:CUSTOM_CATADDITIONALFASTA (null)
[01/77b153] Submitted process > PREPARE_GENOME:GTF2BED (genome_transcriptome.gtf)
[6d/4fe535] Submitted process > PREPARE_GENOME:CUSTOM_GETCHROMSIZES (genome_transcriptome.fasta)
[5d/250077] Submitted process > PREPARE_GENOME:BBMAP_BBSPLIT (null)
Nextflow stderr:
Nextflow 24.04.4 is available - Please consider updating your version to it
Check failure on line 1 in Test Subworkflow PREPARE_GENOME
github-actions / JUnit Test Report
Test Subworkflow PREPARE_GENOME.skip_bbsplit - stub
Assertion failed:
1 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.04.2
Launching `/home/runner/work/rnaseq/rnaseq/.nf-test-83dd331574790256e72e5c103bc5379d.nf` [berserk_cray] DSL2 - revision: 7b440370f4
[3b/1b30bb] Submitted process > PREPARE_GENOME:GTF_FILTER (genome.fasta)
[17/0ccb5f] Submitted process > PREPARE_GENOME:CUSTOM_CATADDITIONALFASTA (null)
[c5/65d380] Submitted process > PREPARE_GENOME:GTF2BED (genome_transcriptome.gtf)
[74/331806] Submitted process > PREPARE_GENOME:CUSTOM_GETCHROMSIZES (genome_transcriptome.fasta)
Nextflow stderr:
Nextflow 24.04.4 is available - Please consider updating your version to it
Check failure on line 1 in Test Subworkflow PREPARE_GENOME
github-actions / JUnit Test Report
Test Subworkflow PREPARE_GENOME.skip_alignment - stub
Assertion failed:
1 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.04.2
Launching `/home/runner/work/rnaseq/rnaseq/.nf-test-1a8315886038f3425e1f2afdb7212f32.nf` [intergalactic_cori] DSL2 - revision: 15679e67bc
[9e/278b71] Submitted process > PREPARE_GENOME:GTF_FILTER (genome.fasta)
[24/e287c1] Submitted process > PREPARE_GENOME:CUSTOM_CATADDITIONALFASTA (null)
[7d/bf4ab9] Submitted process > PREPARE_GENOME:GTF2BED (genome_transcriptome.gtf)
[cb/2dd743] Submitted process > PREPARE_GENOME:CUSTOM_GETCHROMSIZES (genome_transcriptome.fasta)
[e3/4fd8d6] Submitted process > PREPARE_GENOME:BBMAP_BBSPLIT (null)
Nextflow stderr:
Nextflow 24.04.4 is available - Please consider updating your version to it