Bump lots of modules so that conda versions have arm builds #46
4 tests run, 0 passed, 0 skipped, 4 failed.
Annotations
Check failure on line 1 in Test Workflow BAM_MARKDUPLICATES_PICARD
github-actions / JUnit Test Report
Test Workflow BAM_MARKDUPLICATES_PICARD.sarscov2 - bam
Assertion failed:
1 of 3 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.09.2-edge
Launching `/home/runner/work/rnaseq/rnaseq/.nf-test-ed3ae0039a3d9e2b3fbee1c0906fef39.nf` [distraught_meucci] DSL2 - revision: 95cc5135c4
Downloading plugin [email protected]
Downloading plugin [email protected]
[33/c1dd69] Submitted process > BAM_MARKDUPLICATES_PICARD:PICARD_MARKDUPLICATES (test)
[3c/d48234] Submitted process > BAM_MARKDUPLICATES_PICARD:SAMTOOLS_INDEX (test)
[8a/d33689] Submitted process > BAM_MARKDUPLICATES_PICARD:BAM_STATS_SAMTOOLS:SAMTOOLS_IDXSTATS (test)
[78/1bf5e4] Submitted process > BAM_MARKDUPLICATES_PICARD:BAM_STATS_SAMTOOLS:SAMTOOLS_FLAGSTAT (test)
[de/d7d0d0] Submitted process > BAM_MARKDUPLICATES_PICARD:BAM_STATS_SAMTOOLS:SAMTOOLS_STATS (test)
Nextflow stderr:
Check failure on line 1 in Test Workflow BAM_MARKDUPLICATES_PICARD
github-actions / JUnit Test Report
Test Workflow BAM_MARKDUPLICATES_PICARD.homo_sapiens - cram
Assertion failed:
1 of 3 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.09.2-edge
Launching `/home/runner/work/rnaseq/rnaseq/.nf-test-82757110b0aaafc41d47633f05672bd1.nf` [silly_escher] DSL2 - revision: 1babce2ecb
[b3/99b61d] Submitted process > BAM_MARKDUPLICATES_PICARD:PICARD_MARKDUPLICATES (test)
[53/395ecd] Submitted process > BAM_MARKDUPLICATES_PICARD:SAMTOOLS_INDEX (test)
[62/b8cdcf] Submitted process > BAM_MARKDUPLICATES_PICARD:BAM_STATS_SAMTOOLS:SAMTOOLS_IDXSTATS (test)
[4c/7c4b05] Submitted process > BAM_MARKDUPLICATES_PICARD:BAM_STATS_SAMTOOLS:SAMTOOLS_FLAGSTAT (test)
[9b/aa2e84] Submitted process > BAM_MARKDUPLICATES_PICARD:BAM_STATS_SAMTOOLS:SAMTOOLS_STATS (test)
Nextflow stderr:
Check failure on line 1 in Test Workflow BAM_MARKDUPLICATES_PICARD
github-actions / JUnit Test Report
Test Workflow BAM_MARKDUPLICATES_PICARD.sarscov2 - bam - stub
Assertion failed:
1 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.09.2-edge
Launching `/home/runner/work/rnaseq/rnaseq/.nf-test-58c80f9ef948d66ef0babcd4d345bbd7.nf` [special_brahmagupta] DSL2 - revision: 95cc5135c4
[27/1e8522] Submitted process > BAM_MARKDUPLICATES_PICARD:PICARD_MARKDUPLICATES (test)
[19/7c9ac4] Submitted process > BAM_MARKDUPLICATES_PICARD:SAMTOOLS_INDEX (test)
[31/a70f82] Submitted process > BAM_MARKDUPLICATES_PICARD:BAM_STATS_SAMTOOLS:SAMTOOLS_FLAGSTAT (test)
[00/f91fb1] Submitted process > BAM_MARKDUPLICATES_PICARD:BAM_STATS_SAMTOOLS:SAMTOOLS_IDXSTATS (test)
[a9/22d78c] Submitted process > BAM_MARKDUPLICATES_PICARD:BAM_STATS_SAMTOOLS:SAMTOOLS_STATS (test)
Nextflow stderr:
Check failure on line 1 in Test Workflow BAM_MARKDUPLICATES_PICARD
github-actions / JUnit Test Report
Test Workflow BAM_MARKDUPLICATES_PICARD.homo_sapiens - cram - stub
Assertion failed:
1 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.09.2-edge
Launching `/home/runner/work/rnaseq/rnaseq/.nf-test-9657badae44b931a24bc1176e89fd5fb.nf` [maniac_hilbert] DSL2 - revision: 1babce2ecb
[90/2a9a16] Submitted process > BAM_MARKDUPLICATES_PICARD:PICARD_MARKDUPLICATES (test)
[eb/495659] Submitted process > BAM_MARKDUPLICATES_PICARD:SAMTOOLS_INDEX (test)
[9b/662ca4] Submitted process > BAM_MARKDUPLICATES_PICARD:BAM_STATS_SAMTOOLS:SAMTOOLS_IDXSTATS (test)
[1f/e7a076] Submitted process > BAM_MARKDUPLICATES_PICARD:BAM_STATS_SAMTOOLS:SAMTOOLS_FLAGSTAT (test)
[b3/c351b8] Submitted process > BAM_MARKDUPLICATES_PICARD:BAM_STATS_SAMTOOLS:SAMTOOLS_STATS (test)
Nextflow stderr: