Bump lots of modules so that conda versions have arm builds #46
GitHub Actions / JUnit Test Report
failed
Oct 21, 2024 in 0s
4 tests run, 0 passed, 0 skipped, 4 failed.
Annotations
Check failure on line 1 in Test Subworkflow ALIGN_STAR
github-actions / JUnit Test Report
Test Subworkflow ALIGN_STAR.star - no igenomes
Assertion failed:
1 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.09.2-edge
Launching `/home/runner/work/rnaseq/rnaseq/.nf-test-2be7ff0e2973c5db734bd832f73cd98f.nf` [nasty_sax] DSL2 - revision: a4e6d11464
Downloading plugin [email protected]
Downloading plugin [email protected]
[5f/0b4147] Submitted process > STAR_GENOMEGENERATE (genome.fasta)
[bd/7b0d6d] Submitted process > ALIGN_STAR:STAR_ALIGN (test)
[d0/e40d8a] Submitted process > ALIGN_STAR:BAM_SORT_STATS_SAMTOOLS:SAMTOOLS_SORT (test)
[68/ae30a3] Submitted process > ALIGN_STAR:BAM_SORT_STATS_SAMTOOLS:SAMTOOLS_INDEX (test)
[9a/848c3c] Submitted process > ALIGN_STAR:BAM_SORT_STATS_SAMTOOLS:BAM_STATS_SAMTOOLS:SAMTOOLS_IDXSTATS (test)
[ce/6ff562] Submitted process > ALIGN_STAR:BAM_SORT_STATS_SAMTOOLS:BAM_STATS_SAMTOOLS:SAMTOOLS_FLAGSTAT (test)
[3a/36e833] Submitted process > ALIGN_STAR:BAM_SORT_STATS_SAMTOOLS:BAM_STATS_SAMTOOLS:SAMTOOLS_STATS (test)
Nextflow stderr:
Check failure on line 1 in Test Subworkflow ALIGN_STAR
github-actions / JUnit Test Report
Test Subworkflow ALIGN_STAR.star - with igenomes
Assertion failed:
1 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.09.2-edge
Launching `/home/runner/work/rnaseq/rnaseq/.nf-test-bcd4808d26d1f576cde5f496ca0fe77e.nf` [spontaneous_hodgkin] DSL2 - revision: da84042abd
[aa/0d0444] Submitted process > STAR_GENOMEGENERATE_IGENOMES (genome.fasta)
[da/e4ce90] Submitted process > ALIGN_STAR:STAR_ALIGN_IGENOMES (test)
[2f/829c4b] Submitted process > ALIGN_STAR:BAM_SORT_STATS_SAMTOOLS:SAMTOOLS_SORT (test)
[39/5b0bb5] Submitted process > ALIGN_STAR:BAM_SORT_STATS_SAMTOOLS:SAMTOOLS_INDEX (test)
[83/28f7d4] Submitted process > ALIGN_STAR:BAM_SORT_STATS_SAMTOOLS:BAM_STATS_SAMTOOLS:SAMTOOLS_FLAGSTAT (test)
[7a/82e8ef] Submitted process > ALIGN_STAR:BAM_SORT_STATS_SAMTOOLS:BAM_STATS_SAMTOOLS:SAMTOOLS_IDXSTATS (test)
[5d/a1b382] Submitted process > ALIGN_STAR:BAM_SORT_STATS_SAMTOOLS:BAM_STATS_SAMTOOLS:SAMTOOLS_STATS (test)
Nextflow stderr:
Check failure on line 1 in Test Subworkflow ALIGN_STAR
github-actions / JUnit Test Report
Test Subworkflow ALIGN_STAR.star - no igenomes - stub
Assertion failed:
1 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.09.2-edge
Launching `/home/runner/work/rnaseq/rnaseq/.nf-test-e6f40b40a8b79e7710f02593d6906ead.nf` [intergalactic_hypatia] DSL2 - revision: a4e6d11464
[33/346ea7] Submitted process > STAR_GENOMEGENERATE (genome.fasta)
[3c/eba12c] Submitted process > ALIGN_STAR:STAR_ALIGN (test)
[90/533745] Submitted process > ALIGN_STAR:BAM_SORT_STATS_SAMTOOLS:SAMTOOLS_SORT (test)
[c3/699346] Submitted process > ALIGN_STAR:BAM_SORT_STATS_SAMTOOLS:SAMTOOLS_INDEX (test)
[8c/35634d] Submitted process > ALIGN_STAR:BAM_SORT_STATS_SAMTOOLS:BAM_STATS_SAMTOOLS:SAMTOOLS_FLAGSTAT (test)
[a3/53b1f6] Submitted process > ALIGN_STAR:BAM_SORT_STATS_SAMTOOLS:BAM_STATS_SAMTOOLS:SAMTOOLS_IDXSTATS (test)
[bc/ef4969] Submitted process > ALIGN_STAR:BAM_SORT_STATS_SAMTOOLS:BAM_STATS_SAMTOOLS:SAMTOOLS_STATS (test)
Nextflow stderr:
Check failure on line 1 in Test Subworkflow ALIGN_STAR
github-actions / JUnit Test Report
Test Subworkflow ALIGN_STAR.star - with igenomes - stub
Assertion failed:
1 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.09.2-edge
Launching `/home/runner/work/rnaseq/rnaseq/.nf-test-634ace6c49473435d6816278a7df5b2e.nf` [crazy_baekeland] DSL2 - revision: da84042abd
[32/b6d149] Submitted process > STAR_GENOMEGENERATE_IGENOMES (genome.fasta)
[85/9a0d0a] Submitted process > ALIGN_STAR:STAR_ALIGN_IGENOMES (test)
[97/6832f1] Submitted process > ALIGN_STAR:BAM_SORT_STATS_SAMTOOLS:SAMTOOLS_SORT (test)
[85/a18601] Submitted process > ALIGN_STAR:BAM_SORT_STATS_SAMTOOLS:SAMTOOLS_INDEX (test)
[d9/5e6734] Submitted process > ALIGN_STAR:BAM_SORT_STATS_SAMTOOLS:BAM_STATS_SAMTOOLS:SAMTOOLS_IDXSTATS (test)
[c2/0fada5] Submitted process > ALIGN_STAR:BAM_SORT_STATS_SAMTOOLS:BAM_STATS_SAMTOOLS:SAMTOOLS_FLAGSTAT (test)
[b4/f7b422] Submitted process > ALIGN_STAR:BAM_SORT_STATS_SAMTOOLS:BAM_STATS_SAMTOOLS:SAMTOOLS_STATS (test)
Nextflow stderr:
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