Repositories list

• GP2-post-GWAS-analysis

  Public
  IPDGC x GP2 Hackathon 2021 Project - post-GWAS analysis

  HTML

  •1•0•0•0•Updated Nov 22, 2022Nov 22, 2022

• GP2-visualise-longitudinal-variant-effects

  Public
  IPDGC x GP2 Hackathon 2021 Project - Visualize longitudinal and cross-sectional variant effects

  R

  •6•1•0•0•Updated Nov 22, 2022Nov 22, 2022

• GP2-Variant-Interaction-Pipeline

  Public
  IPDGC x GP2 Hackathon 2021 Project - Variant Interaction Pipeline

  R

  •0•0•0•0•Updated Nov 22, 2022Nov 22, 2022

• GP2-network-generation

  Public
  IPDGC x GP2 Hackathon 2021 Project - Network generation and visualization

  Jupyter Notebook

  •0•0•0•0•Updated Nov 21, 2022Nov 21, 2022

• Colocalization-Pipeline

  Public
  iPDGC Hackathon 2021 Project

  R

  •1•2•0•0•Updated Nov 21, 2022Nov 21, 2022

• GP2-pathway-enrichment-pipeline

  Public
  IPDGC x GP2 Hackathon 2021 Project - Pathway and cell type enrichment pipeline

  Jupyter Notebook

  •1•0•0•0•Updated Nov 21, 2022Nov 21, 2022

• IPDGC-Trainees

  Public
  This repo contains the code from the various scripts from the trainee-led projects within IPDGC

  Jupyter Notebook

  •9•5•0•0•Updated Apr 21, 2022Apr 21, 2022

• GP2-cohort-tracker

  Public
  IPDGC x GP2 Hackathon 2021 Project - Cohort Tracker for GP2

  Python

  •0•2•0•0•Updated Nov 8, 2021Nov 8, 2021

• PD-Wiki-Loci

  Public
  Working on PD wiki loci, IPDGC Hackathon

  R

  •3•0•0•0•Updated May 18, 2021May 18, 2021

• pdgsc

  Public
  PDGSC QC and analysis scripts

  R

  •2•0•0•0•Updated Jan 12, 2021Jan 12, 2021

• Mendelian-Randomization

  Public
  2•1•0•0•Updated Sep 13, 2020Sep 13, 2020

• Online-PD-Risk-Score

  Public
  Calculator for PD risk scores, IPDGC Hackathon

  Jupyter Notebook

  •0•0•0•0•Updated Jun 10, 2020Jun 10, 2020

• Sentiment-in-PD-Progression

  Public
  Web scraping Twitter for sentiment analysis in PD progression, IPDGC Hackathon

  Jupyter Notebook

  •2•2•0•0•Updated Jun 10, 2020Jun 10, 2020

• Automate-with-Python

  Public
  “Automate the boring stuff with Python” for Population Genetics, IPDGC Hackathon

  Python

  •0•1•0•0•Updated Jun 10, 2020Jun 10, 2020

• PD-Project-Tracker

  Public
  Creating a project tracker for IPDGC, IPDGC Hackathon

  R

  •1•0•0•0•Updated Jun 10, 2020Jun 10, 2020

• Docker-Coexpression-Networks

  Public
  Generating coexpression gene network webpages using Docker technology, an IPDGC Hackathon 2019 project

  HTML

  •0•0•0•0•Updated Dec 18, 2019Dec 18, 2019

• Pathway-Enrichment-Analysis-Visualization

  Public
  Visualize the results of pathway enrichment analyses, an IPDGC Hackathon 2019 Project

  0•0•0•0•Updated Dec 9, 2019Dec 9, 2019

• iPDGC-PDMR-Portal

  Public
  iPDGC Parkinson Disease Mendelian Randomization Portal

  R

  •2•3•1•0•Updated Oct 17, 2019Oct 17, 2019

• GenoML-Brief-Intro

  Public
  The briefest intro to our genomics focused autoML pipeline

  1•1•0•0•Updated Aug 30, 2019Aug 30, 2019

• pdpmGWAS-browser

  Public
  PD Progression Meta-GWAS Browser

  R

  •1•0•0•0•Updated May 9, 2019May 9, 2019

• genetic-risk-score

  Public
  0•0•0•0•Updated Apr 22, 2019Apr 22, 2019

• General-Info

  Public
  General info regarding the IPDGC, its GitHub site plus current and past projects

  0•2•0•0•Updated Mar 21, 2019Mar 21, 2019

• Manhattan-Plotter

  Public
  This is a repository to help make plots similar to Figure 2 in https://www.biorxiv.org/content/10.1101/388165v3

  R

  •6•12•1•0•Updated Mar 14, 2019Mar 14, 2019

• iGraph-Networks

  Public
  Scripting to run iGraph networks

  R

  •1•0•0•0•Updated Mar 13, 2019Mar 13, 2019