snp dists

snp-dists

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Convert a FASTA alignment to SNP distance matrix

Documentation : https://github.com/tseemann/snp-dists

Citation :

Directory tree:

snp-dists/
└── snp_matrix.txt

Example files:

snp_matrix.txt

snp-dists 0.8.2,GCF_000788095.1_ASM78809v1_genomic,GCF_000758465.1_ASM75846v1_genomic,GCF_000834105.1_ASM83410v1_genomic,GCF_000972335.1_ASM97233v1_genomic,GCF_000742995.1_ASM74299v1_genomic,GCF_000978875.1_ASM97887v1_genomic
GCF_000788095.1_ASM78809v1_genomic,0,11519,38512,38969,13267,14924
GCF_000758465.1_ASM75846v1_genomic,11519,0,38601,39050,13871,14870
GCF_000834105.1_ASM83410v1_genomic,38512,38601,0,41260,38775,38370
GCF_000972335.1_ASM97233v1_genomic,38969,39050,41260,0,39045,38721
GCF_000742995.1_ASM74299v1_genomic,13267,13871,38775,39045,0,14740
GCF_000978875.1_ASM97887v1_genomic,14924,14870,38370,38721,14740,0