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fastp
Young edited this page Feb 23, 2024
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fastp
About: |
A tool designed to provide fast all-in-one preprocessing for FastQ files.
Documentation : https://github.com/OpenGene/fastp
Citation : https://onlinelibrary.wiley.com/doi/10.1002/imt2.107
Directory tree:
fastp/
├── sample_fastp.html
├── sample_fastp.json
├── sample_fastp_R1.fastq.gz
└── sample_fastp_R2.fastq.gz
Example file for an individual sample (sample_fastp.json)
{
"summary": {
"fastp_version": "0.23.4",
"sequencing": "paired end (251 cycles + 251 cycles)",
"before_filtering": {
"total_reads":1000226,
"total_bases":241980579,
"q20_bases":225035017,
"q30_bases":216813598,
"q20_rate":0.929971,
"q30_rate":0.895996,
"read1_mean_length":241,
"read2_mean_length":241,
"gc_content":0.512092
},
"after_filtering": {
"total_reads":976800,
"total_bases":236127901,
"q20_bases":221372450,
"q30_bases":213871766,
"q20_rate":0.937511,
"q30_rate":0.905745,
"read1_mean_length":241,
"read2_mean_length":241,
"gc_content":0.510579
}
},
"filtering_result": {
"passed_filter_reads": 976800,
"low_quality_reads": 23426,
"too_many_N_reads": 0,
"too_short_reads": 0,
"too_long_reads": 0
},
"duplication": {
"rate": 0.00968981
},
"insert_size": {
"peak": 394,
"unknown": 83404,
"histogram": [0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,1,0,69,21,28,32,28,29,40,26,32,26,26,28,33,36,33,29,44,29,44,32,30,36,31,40,32,35,38,43,45,29,34,40,42,34,42,50,45,34,30,32,31,42,55,41,37,44,51,33,38,44,39,44,48,41,65,46,56,38,47,49,57,46,53,49,55,67,59,47,69,41,45,41,58,51,43,66,64,75,48,51,52,73,63,48,66,61,82,74,70,73,69,58,65,74,59,60,58,75,81,68,76,60,70,65,74,69,74,69,88,71,72,92,88,81,64,72,74,81,91,79,98,94,84,93,88,106,95,91,101,72,75,100,96,116,102,79,86,97,78,96,113,104,94,104,127,97,108,113,131,113,134,107,107,105,117,114,113,116,112,122,95,145,117,115,130,133,117,128,145,139,136,143,128,127,134,123,142,144,136,127,156,162,128,136,148,155,145,137,139,155,164,167,144,145,153,162,161,194,163,207,171,176,190,190,184,196,194,173,179,181,203,189,196,199,193,235,141,185,192,198,198,194,212,211,234,214,247,203,222,223,219,199,211,203,237,227,243,225,233,220,233,235,266,232,234,231,254,231,256,253,252,232,259,249,239,261,240,251,247,264,223,269,286,261,237,258,293,290,275,220,279,304,288,271,276,292,280,286,285,299,275,278,279,318,314,276,297,292,313,291,292,305,293,287,301,302,314,293,320,289,299,324,320,312,291,329,294,316,306,316,336,332,339,309,336,346,300,347,341,323,316,326,299,311,295,320,307,313,314,338,339,325,313,297,323,333,354,302,333,301,284,329,336,314,332,346,308,308,308,318,319,335,319,315,316,351,350,324,341,366,308,332,332,324,336,348,298,276,301,342,341,346,334,323,319,359,359,343,286,323,303,286,308,323,314,296,321,330,312,302,316,312,321,339,349,320,326,336,264,314,313,291,358,315,304,296,320,293,280,310,284,330,298,303,318,311,311,324,313,318,279,279,326,297,274,294,315,319,300,302,304,312,278,265,287,233,121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0]
},
"adapter_cutting": {
"adapter_trimmed_reads": 3218,
"adapter_trimmed_bases": 85557,
"read1_adapter_sequence": "unspecified",
"read2_adapter_sequence": "unspecified",
"read1_adapter_counts": {"CTG":5, "CTGG":4, "CTGTC":4, "others":204},
"read2_adapter_counts": {"C":75, "CG":19, "CTG":42, "CTGG":65, "CTGTC":154, "others":1254}
},
"read1_before_filtering": {
"total_reads": 500113,
"total_bases": 120962135,
"q20_bases": 116638213,
"q30_bases": 114206436,
"total_cycles": 251,
"quality_curves": {
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"T":[33.1153,33.1287,33.2506,33.337,33.3873,35.9607,35.9666,35.9855,35.9501,35.9084,35.8861,35.6942,37.5028,37.4334,37.3903,37.4562,37.4599,37.48,37.4646,37.4753,37.4911,37.5015,38.1056,38.118,38.0888,38.1122,38.0718,38.1036,38.1006,38.0453,38.0354,38.0308,38.065,38.0476,38.0396,38.0205,38.0906,37.9776,38.0344,38.0223,38.0357,38.0057,37.9941,38.0248,38.0051,37.9956,37.9372,38.036,37.957,37.9218,37.9244,37.9278,37.9571,37.9321,37.9563,37.961,37.9178,37.9204,37.8906,37.936,37.9087,37.8132,37.9015,37.8472,37.8523,37.8271,37.8086,37.8235,37.8408,37.7356,37.762,37.7984,37.8137,37.7988,37.7885,37.7593,37.7881,37.7283,37.7213,37.7101,37.7144,37.7201,37.7138,37.7206,37.7788,37.678,37.7008,37.6771,37.7025,37.6768,37.634,37.6301,37.6945,37.6517,37.6159,37.6368,37.6296,37.5785,37.5282,37.5152,37.602,37.5914,37.5398,37.5232,37.589,37.5805,37.4611,37.4931,37.4321,37.5238,37.4235,37.3598,37.4012,37.4632,37.3603,37.3094,37.3395,37.3999,37.2753,37.2533,37.3453,37.3345,37.2798,37.257,37.2919,37.2584,37.2017,37.1885,37.2625,37.2532,37.1462,37.0906,37.159,37.1582,37.0739,36.973,37.0564,37.0841,37.0097,36.953,37.0495,36.9493,36.8349,36.8352,36.9321,36.9192,36.7937,36.6461,36.8237,36.8313,36.6878,36.6379,36.6533,36.6947,36.5847,36.6578,36.5982,36.5805,36.66,36.5271,36.2081,36.4461,36.3616,36.2482,36.1955,36.3638,36.224,36.1645,36.1742,36.2009,36.0905,36.0916,35.9897,35.9361,35.9441,35.9452,35.8409,35.8873,35.8681,35.8661,35.7358,35.83,35.7958,35.7386,35.7343,35.7598,35.6784,35.6928,35.5161,35.4644,35.5233,35.4479,35.3818,35.3448,35.3689,35.3689,35.249,35.1896,35.2986,35.215,35.0011,35.0644,35.1143,35.0661,34.847,34.8549,34.9796,34.8593,34.8914,34.8713,34.9413,34.9347,34.7576,34.696,34.8465,34.7349,34.6319,34.5641,34.6615,34.7515,34.4169,34.4659,34.5388,34.2751,34.4158,34.4752,34.4977,34.5964,34.2813,34.3145,34.3516,34.4847,34.2583,34.0348,34.3136,34.2986,34.0812,34.1674,34.1947,34.2956,34.0146,33.9353,34.1235,34.0577,33.7054,33.7242,33.8654,33.7961,33.7672,33.6544,28.1894],
"C":[33.0587,33.1715,33.4594,33.5207,33.4369,35.8412,35.8297,35.7654,35.7832,35.5707,35.4928,35.3466,37.5188,37.4883,37.4683,37.4935,37.4983,37.4837,37.4545,37.4848,37.5209,37.5204,38.0736,38.0833,38.0567,38.0834,38.0641,38.0818,38.0683,38.0272,38.0109,38.0068,37.9976,38.003,37.9527,37.9711,38.0345,37.9525,37.9544,37.9805,37.9706,37.9662,37.934,37.9905,37.9895,37.9922,37.9395,38.0411,37.9471,37.9173,37.9093,37.9261,37.9544,37.9174,37.934,37.9427,37.9479,37.9491,37.9086,37.9372,37.9293,37.8406,37.8895,37.8559,37.889,37.8495,37.8525,37.8609,37.8594,37.798,37.814,37.8179,37.8131,37.8124,37.84,37.7936,37.8045,37.7773,37.7516,37.7531,37.7501,37.7684,37.7643,37.748,37.8321,37.7509,37.7554,37.7515,37.8045,37.7594,37.7112,37.7146,37.7263,37.7314,37.6907,37.724,37.7242,37.6613,37.6542,37.5991,37.7016,37.6579,37.6215,37.6277,37.6273,37.6809,37.5913,37.5772,37.5838,37.6051,37.5533,37.5024,37.4877,37.5881,37.5074,37.434,37.4709,37.5079,37.4068,37.3588,37.4449,37.4673,37.4282,37.42,37.4338,37.4105,37.3495,37.3164,37.3755,37.4498,37.3663,37.2967,37.329,37.3444,37.2638,37.1792,37.2233,37.2238,37.2251,37.1738,37.2174,37.1931,37.0901,37.0313,37.0943,37.1306,36.9734,36.9282,36.9831,37.0392,36.9271,36.8866,36.8556,36.8946,36.891,36.9079,36.8575,36.8216,36.8444,36.8167,36.5607,36.6131,36.5963,36.5312,36.4667,36.5129,36.4289,36.4405,36.4077,36.4248,36.3585,36.3477,36.2438,36.1477,36.1865,36.1848,36.1012,36.0904,36.125,36.1101,36.0467,36.0457,36.0438,36.0671,35.9895,36.0186,35.9914,35.9581,35.8616,35.7328,35.7784,35.761,35.6234,35.6975,35.6055,35.6202,35.5679,35.5156,35.5439,35.5278,35.3758,35.3608,35.3417,35.343,35.2235,35.1674,35.2812,35.2151,35.211,35.155,35.2398,35.2381,35.1712,35.0374,35.176,35.0594,35.047,34.8873,34.988,35.0681,34.9461,34.7971,34.8321,34.6194,34.7681,34.8,34.9331,34.9063,34.7851,34.7248,34.8072,34.8385,34.6635,34.4354,34.5525,34.7101,34.5744,34.5775,34.5967,34.6691,34.5106,34.4533,34.4346,34.4595,34.2053,34.176,34.2099,34.2376,34.256,34.0912,27.985],
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"AAGAA":145439, "AAGAT":107673, "AAGAC":74646, "AAGAG":91036, "AAGTA":57847, "AAGTT":99120, "AAGTC":70532, "AAGTG":94599, "AAGCA":116896, "AAGCT":85856, "AAGCC":141422, "AAGCG":159851, "AAGGA":70962, "AAGGT":100394, "AAGGC":108777, "AAGGG":81069,
"ATAAA":177640, "ATAAT":121371, "ATAAC":125948, "ATAAG":74480, "ATATA":62520, "ATATT":145165, "ATATC":146795, "ATATG":92635, "ATACA":78354, "ATACT":61354, "ATACC":119882, "ATACG":89952, "ATAGA":53965, "ATAGT":57924, "ATAGC":93183, "ATAGG":32937,
"ATTAA":144106, "ATTAT":122173, "ATTAC":120356, "ATTAG":43955, "ATTTA":119615, "ATTTT":223728, "ATTTC":154684, "ATTTG":120126, "ATTCA":140910, "ATTCT":98065, "ATTCC":101966, "ATTCG":100741, "ATTGA":136812, "ATTGT":100680, "ATTGC":168814, "ATTGG":85452,
"ATCAA":165405, "ATCAT":152705, "ATCAC":159918, "ATCAG":200427, "ATCTA":40594, "ATCTT":107988, "ATCTC":97458, "ATCTG":152320, "ATCCA":142318, "ATCCT":103304, "ATCCC":119462, "ATCCG":145247, "ATCGA":131171, "ATCGT":120322, "ATCGC":194449, "ATCGG":139497,
"ATGAA":154513, "ATGAT":152505, "ATGAC":133051, "ATGAG":84251, "ATGTA":60390, "ATGTT":126840, "ATGTC":90059, "ATGTG":87402, "ATGCA":125677, "ATGCT":114107, "ATGCC":163070, "ATGCG":150475, "ATGGA":100840, "ATGGT":132470, "ATGGC":190930, "ATGGG":82367,
"ACAAA":140298, "ACAAT":101925, "ACAAC":133304, "ACAAG":58718, "ACATA":58701, "ACATT":97860, "ACATC":126962, "ACATG":82884, "ACACA":65927, "ACACT":65318, "ACACC":121359, "ACACG":74162, "ACAGA":93213, "ACAGT":81322, "ACAGC":168936, "ACAGG":126141,
"ACTAA":53119, "ACTAT":58073, "ACTAC":59897, "ACTAG":8621, "ACTTA":63527, "ACTTT":109168, "ACTTC":103914, "ACTTG":47292, "ACTCA":83783, "ACTCT":62134, "ACTCC":69633, "ACTCG":47058, "ACTGA":121325, "ACTGT":83014, "ACTGC":140706, "ACTGG":185332,
"ACCAA":113821, "ACCAT":137059, "ACCAC":142322, "ACCAG":197986, "ACCTA":31464, "ACCTT":103260, "ACCTC":64465, "ACCTG":160118, "ACCCA":88465, "ACCCT":61537, "ACCCC":73842, "ACCCG":112836, "ACCGA":133843, "ACCGT":140613, "ACCGC":178423, "ACCGG":163741,
"ACGAA":105525, "ACGAT":117218, "ACGAC":97515, "ACGAG":53934, "ACGTA":77428, "ACGTT":147948, "ACGTC":92179, "ACGTG":81604, "ACGCA":143520, "ACGCT":148787, "ACGCC":192883, "ACGCG":144708, "ACGGA":94832, "ACGGT":139107, "ACGGC":159227, "ACGGG":94361,
"AGAAA":165394, "AGAAT":98385, "AGAAC":112954, "AGAAG":113454, "AGATA":101442, "AGATT":96190, "AGATC":93016, "AGATG":108022, "AGACA":76325, "AGACT":49461, "AGACC":63318, "AGACG":98507, "AGAGA":80870, "AGAGT":61222, "AGAGC":91638, "AGAGG":60173,
"AGTAA":90028, "AGTAT":60179, "AGTAC":71164, "AGTAG":37925, "AGTTA":76358, "AGTTT":120253, "AGTTC":107211, "AGTTG":101350, "AGTCA":78592, "AGTCT":47831, "AGTCC":46053, "AGTCG":73522, "AGTGA":103206, "AGTGT":62380, "AGTGC":105732, "AGTGG":93593,
"AGCAA":160861, "AGCAT":116015, "AGCAC":116600, "AGCAG":182236, "AGCTA":48646, "AGCTT":85276, "AGCTC":81077, "AGCTG":153627, "AGCCA":159743, "AGCCT":96232, "AGCCC":95875, "AGCCG":126605, "AGCGA":149317, "AGCGT":154313, "AGCGC":200418, "AGCGG":169724,
"AGGAA":105367, "AGGAT":102065, "AGGAC":42139, "AGGAG":61398, "AGGTA":78344, "AGGTT":104526, "AGGTC":64379, "AGGTG":105843, "AGGCA":107252, "AGGCT":92911, "AGGCC":78009, "AGGCG":148499, "AGGGA":68946, "AGGGT":61129, "AGGGC":85167, "AGGGG":61203,
"TAAAA":183589, "TAAAT":118562, "TAAAC":125359, "TAAAG":120986, "TAATA":84794, "TAATT":94151, "TAATC":119631, "TAATG":129864, "TAACA":89454, "TAACT":76066, "TAACC":118296, "TAACG":147131, "TAAGA":52410, "TAAGT":64691, "TAAGC":91946, "TAAGG":59609,
"TATAA":64750, "TATAT":60864, "TATAC":53663, "TATAG":36561, "TATTA":84202, "TATTT":136935, "TATTC":126785, "TATTG":126591, "TATCA":133278, "TATCT":100913, "TATCC":119423, "TATCG":149033, "TATGA":83491, "TATGT":58341, "TATGC":101565, "TATGG":93068,
"TACAA":67427, "TACAT":62104, "TACAC":58203, "TACAG":101999, "TACTA":27051, "TACTT":58816, "TACTC":56698, "TACTG":122195, "TACCA":104924, "TACCT":79879, "TACCC":86624, "TACCG":160359, "TACGA":62693, "TACGT":79953, "TACGC":135759, "TACGG":88602,
"TAGAA":49852, "TAGAT":40877, "TAGAC":30041, "TAGAG":33544, "TAGTA":26778, "TAGTT":46201, "TAGTC":38487, "TAGTG":65230, "TAGCA":49652, "TAGCT":48632, "TAGCC":74513, "TAGCG":100371, "TAGGA":20974, "TAGGT":30772, "TAGGC":35473, "TAGGG":23587,
"TTAAA":156079, "TTAAT":143430, "TTAAC":144829, "TTAAG":81937, "TTATA":63623, "TTATT":152411, "TTATC":172815, "TTATG":107547, "TTACA":85379, "TTACT":91999, "TTACC":158070, "TTACG":123516, "TTAGA":34116, "TTAGT":52285, "TTAGC":81770, "TTAGG":29443,
"TTTAA":154067, "TTTAT":175010, "TTTAC":147922, "TTTAG":69029, "TTTTA":182047, "TTTTT":331944, "TTTTC":241365, "TTTTG":212497, "TTTCA":207789, "TTTCT":165328, "TTTCC":163609, "TTTCG":152380, "TTTGA":142490, "TTTGT":140558, "TTTGC":218651, "TTTGG":108638,
"TTCAA":127664, "TTCAT":154787, "TTCAC":156214, "TTCAG":220577, "TTCTA":50184, "TTCTT":146703, "TTCTC":111055, "TTCTG":185268, "TTCCA":145262, "TTCCT":106279, "TTCCC":115958, "TTCCG":150961, "TTCGA":88746, "TTCGT":106005, "TTCGC":169357, "TTCGG":111670,
"TTGAA":127393, "TTGAT":163841, "TTGAC":86611, "TTGAG":106087, "TTGTA":65637, "TTGTT":157778, "TTGTC":106978, "TTGTG":98534, "TTGCA":124448, "TTGCT":164643, "TTGCC":215738, "TTGCG":164382, "TTGGA":40190, "TTGGT":114814, "TTGGC":121960, "TTGGG":66497,
"TCAAA":144653, "TCAAT":137299, "TCAAC":145117, "TCAAG":64914, "TCATA":84071, "TCATT":128823, "TCATC":192263, "TCATG":122110, "TCACA":73982, "TCACT":104172, "TCACC":197398, "TCACG":119977, "TCAGA":129869, "TCAGT":120093, "TCAGC":243681, "TCAGG":188533,
"TCTAA":33241, "TCTAT":52747, "TCTAC":60259, "TCTAG":7619, "TCTTA":52382, "TCTTT":155032, "TCTTC":157973, "TCTTG":58716, "TCTCA":68542, "TCTCT":83380, "TCTCC":89152, "TCTCG":75365, "TCTGA":129574, "TCTGT":90494, "TCTGC":173105, "TCTGG":191518,
"TCCAA":42388, "TCCAT":101311, "TCCAC":105615, "TCCAG":188513, "TCCTA":20595, "TCCTT":72389, "TCCTC":68790, "TCCTG":155811, "TCCCA":72735, "TCCCT":68648, "TCCCC":92454, "TCCCG":104542, "TCCGA":53840, "TCCGT":96394, "TCCGC":143116, "TCCGG":171156,
"TCGAA":88155, "TCGAT":132835, "TCGAC":90732, "TCGAG":65122, "TCGTA":62165, "TCGTT":116599, "TCGTC":115946, "TCGTG":83562, "TCGCA":98297, "TCGCT":146850, "TCGCC":202241, "TCGCG":144173, "TCGGA":53551, "TCGGT":129905, "TCGGC":144800, "TCGGG":87825,
"TGAAA":205332, "TGAAT":141528, "TGAAC":148885, "TGAAG":158474, "TGATA":134632, "TGATT":176230, "TGATC":130237, "TGATG":231082, "TGACA":107030, "TGACT":78743, "TGACC":137734, "TGACG":170399, "TGAGA":68650, "TGAGT":79355, "TGAGC":120791, "TGAGG":78516,
"TGTAA":86956, "TGTAT":75171, "TGTAC":69187, "TGTAG":54875, "TGTTA":90496, "TGTTT":179947, "TGTTC":136127, "TGTTG":166404, "TGTCA":107710, "TGTCT":72589, "TGTCC":66027, "TGTCG":128817, "TGTGA":72056, "TGTGT":64892, "TGTGC":102163, "TGTGG":109114,
"TGCAA":126047, "TGCAT":122246, "TGCAC":102598, "TGCAG":165466, "TGCTA":49982, "TGCTT":116667, "TGCTC":122668, "TGCTG":285547, "TGCCA":202205, "TGCCT":105715, "TGCCC":121073, "TGCCG":246658, "TGCGA":99600, "TGCGT":146266, "TGCGC":224019, "TGCGG":165354,
"TGGAA":144695, "TGGAT":137469, "TGGAC":60932, "TGGAG":87706, "TGGTA":101681, "TGGTT":162569, "TGGTC":117609, "TGGTG":200072, "TGGCA":204034, "TGGCT":159517, "TGGCC":106172, "TGGCG":288742, "TGGGA":73892, "TGGGT":85842, "TGGGC":99185, "TGGGG":100037,
"CAAAA":209354, "CAAAT":121452, "CAAAC":139114, "CAAAG":136750, "CAATA":125451, "CAATT":104367, "CAATC":123225, "CAATG":141079, "CAACA":171714, "CAACT":103988, "CAACC":131803, "CAACG":172701, "CAAGA":59744, "CAAGT":46484, "CAAGC":79627, "CAAGG":69346,
"CATAA":107827, "CATAT":93016, "CATAC":82380, "CATAG":53100, "CATTA":128918, "CATTT":149976, "CATTC":111847, "CATTG":140391, "CATCA":233134, "CATCT":108612, "CATCC":154121, "CATCG":171683, "CATGA":121978, "CATGT":81149, "CATGC":113033, "CATGG":108806,
"CACAA":98467, "CACAT":88830, "CACAC":71048, "CACAG":95027, "CACTA":66303, "CACTT":95438, "CACTC":72596, "CACTG":136692, "CACCA":204701, "CACCT":106718, "CACCC":102680, "CACCG":193345, "CACGA":83777, "CACGT":81344, "CACGC":153177, "CACGG":112498,
"CAGAA":187989, "CAGAT":153150, "CAGAC":146328, "CAGAG":100525, "CAGTA":118954, "CAGTT":174454, "CAGTC":93568, "CAGTG":135852, "CAGCA":290282, "CAGCT":155302, "CAGCC":191300, "CAGCG":302948, "CAGGA":153672, "CAGGT":157562, "CAGGC":204237, "CAGGG":127420,
"CTAAA":69300, "CTAAT":43601, "CTAAC":54301, "CTAAG":29574, "CTATA":36420, "CTATT":66089, "CTATC":83852, "CTATG":54043, "CTACA":54997, "CTACT":38721, "CTACC":71870, "CTACG":78412, "CTAGA":7900, "CTAGT":8372, "CTAGC":13562, "CTAGG":11391,
"CTTAA":82644, "CTTAT":73922, "CTTAC":84336, "CTTAG":30379, "CTTTA":120147, "CTTTT":160174, "CTTTC":146190, "CTTTG":137959, "CTTCA":159448, "CTTCT":116608, "CTTCC":144695, "CTTCG":119293, "CTTGA":64246, "CTTGT":58297, "CTTGC":100011, "CTTGG":32512,
"CTCAA":110903, "CTCAT":86802, "CTCAC":73307, "CTCAG":88608, "CTCTA":33484, "CTCTT":95288, "CTCTC":69908, "CTCTG":102691, "CTCCA":88567, "CTCCT":64552, "CTCCC":59824, "CTCCG":83928, "CTCGA":65993, "CTCGT":57330, "CTCGC":97235, "CTCGG":58959,
"CTGAA":220261, "CTGAT":198066, "CTGAC":171950, "CTGAG":87644, "CTGTA":101144, "CTGTT":165939, "CTGTC":106768, "CTGTG":93589, "CTGCA":164260, "CTGCT":179728, "CTGCC":185873, "CTGCG":186350, "CTGGA":188462, "CTGGT":195852, "CTGGC":303834, "CTGGG":132095,
"CCAAA":107984, "CCAAT":84487, "CCAAC":120003, "CCAAG":32399, "CCATA":92433, "CCATT":140679, "CCATC":167131, "CCATG":109784, "CCACA":110897, "CCACT":94539, "CCACC":150418, "CCACG":117086, "CCAGA":193027, "CCAGT":181173, "CCAGC":305183, "CCAGG":140873,
"CCTAA":28614, "CCTAT":34009, "CCTAC":38112, "CCTAG":11631, "CCTTA":60104, "CCTTT":120208, "CCTTC":116337, "CCTTG":69997, "CCTCA":84652, "CCTCT":60471, "CCTCC":51139, "CCTCG":69652, "CCTGA":190214, "CCTGT":125738, "CCTGC":189641, "CCTGG":142837,
"CCCAA":66409, "CCCAT":81406, "CCCAC":80770, "CCCAG":134160, "CCCTA":23991, "CCCTT":79883, "CCCTC":47512, "CCCTG":125257, "CCCCA":100389, "CCCCT":59905, "CCCCC":61004, "CCCCG":94951, "CCCGA":90384, "CCCGT":94070, "CCCGC":137878, "CCCGG":126730,
"CCGAA":114051, "CCGAT":141320, "CCGAC":103204, "CCGAG":59744, "CCGTA":87614, "CCGTT":161521, "CCGTC":127399, "CCGTG":112407, "CCGCA":167984, "CCGCT":165444, "CCGCC":205744, "CCGCG":143461, "CCGGA":171717, "CCGGT":160506, "CCGGC":160636, "CCGGG":126648,
"CGAAA":150674, "CGAAT":100239, "CGAAC":105133, "CGAAG":118361, "CGATA":147463, "CGATT":136749, "CGATC":130256, "CGATG":169836, "CGACA":129909, "CGACT":75324, "CGACC":97614, "CGACG":119936, "CGAGA":76385, "CGAGT":46210, "CGAGC":86740, "CGAGG":66865,
"CGTAA":123703, "CGTAT":89067, "CGTAC":75764, "CGTAG":76565, "CGTTA":145611, "CGTTT":188108, "CGTTC":128275, "CGTTG":170875, "CGTCA":174903, "CGTCT":97005, "CGTCC":78135, "CGTCG":123395, "CGTGA":120163, "CGTGT":74274, "CGTGC":119556, "CGTGG":114879,
"CGCAA":163969, "CGCAT":151786, "CGCAC":135630, "CGCAG":185301, "CGCTA":97403, "CGCTT":162929, "CGCTC":111257, "CGCTG":287307, "CGCCA":288804, "CGCCT":150444, "CGCCC":138604, "CGCCG":231619, "CGCGA":144127, "CGCGT":143389, "CGCGC":224730, "CGCGG":142305,
"CGGAA":148203, "CGGAT":142356, "CGGAC":84543, "CGGAG":84451, "CGGTA":155586, "CGGTT":158500, "CGGTC":104829, "CGGTG":185586, "CGGCA":251888, "CGGCT":126823, "CGGCC":77346, "CGGCG":234995, "CGGGA":104032, "CGGGT":108070, "CGGGC":137267, "CGGGG":100057,
"GAAAA":238116, "GAAAT":154448, "GAAAC":146726, "GAAAG":144708, "GAATA":129764, "GAATT":102455, "GAATC":99179, "GAATG":113313, "GAACA":138260, "GAACT":108142, "GAACC":98876, "GAACG":129302, "GAAGA":156851, "GAAGT":103087, "GAAGC":155963, "GAAGG":115602,
"GATAA":175391, "GATAT":147526, "GATAC":98814, "GATAG":83248, "GATTA":123321, "GATTT":189739, "GATTC":99276, "GATTG":121604, "GATCA":133414, "GATCT":90795, "GATCC":109972, "GATCG":131163, "GATGA":190710, "GATGT":125606, "GATGC":175158, "GATGG":166654,
"GACAA":109505, "GACAT":89098, "GACAC":73287, "GACAG":108927, "GACTA":39618, "GACTT":70243, "GACTC":45456, "GACTG":96357, "GACCA":117526, "GACCT":64898, "GACCC":49522, "GACCG":106164, "GACGA":113012, "GACGT":91699, "GACGC":132436, "GACGG":128113,
"GAGAA":109422, "GAGAT":97688, "GAGAC":36961, "GAGAG":70354, "GAGTA":56362, "GAGTT":86517, "GAGTC":42943, "GAGTG":70792, "GAGCA":120818, "GAGCT":78521, "GAGCC":70682, "GAGCG":113736, "GAGGA":66574, "GAGGT":64643, "GAGGC":78310, "GAGGG":46408,
"GTAAA":147943, "GTAAT":121251, "GTAAC":106208, "GTAAG":84119, "GTATA":53873, "GTATT":111814, "GTATC":98551, "GTATG":83649, "GTACA":72184, "GTACT":72458, "GTACC":81505, "GTACG":76820, "GTAGA":58890, "GTAGT":58366, "GTAGC":84679, "GTAGG":37612,
"GTTAA":147626, "GTTAT":125732, "GTTAC":105574, "GTTAG":55204, "GTTTA":125919, "GTTTT":255452, "GTTTC":145695, "GTTTG":142486, "GTTCA":152998, "GTTCT":112212, "GTTCC":106159, "GTTCG":105426, "GTTGA":141808, "GTTGT":129939, "GTTGC":180956, "GTTGG":118575,
"GTCAA":89974, "GTCAT":133543, "GTCAC":105404, "GTCAG":175618, "GTCTA":30019, "GTCTT":74393, "GTCTC":36885, "GTCTG":144114, "GTCCA":62536, "GTCCT":41951, "GTCCC":41826, "GTCCG":86104, "GTCGA":92109, "GTCGT":95017, "GTCGC":130255, "GTCGG":107887,
"GTGAA":154928, "GTGAT":159863, "GTGAC":103018, "GTGAG":71188, "GTGTA":59932, "GTGTT":124070, "GTGTC":70885, "GTGTG":70240, "GTGCA":103736, "GTGCT":116086, "GTGCC":110521, "GTGCG":137105, "GTGGA":103009, "GTGGT":140277, "GTGGC":141975, "GTGGG":80574,
"GCAAA":215894, "GCAAT":170116, "GCAAC":180904, "GCAAG":100229, "GCATA":100945, "GCATT":163316, "GCATC":178461, "GCATG":111126, "GCACA":103528, "GCACT":105537, "GCACC":136464, "GCACG":121149, "GCAGA":174146, "GCAGT":140140, "GCAGC":221271, "GCAGG":190204,
"GCTAA":81783, "GCTAT":93721, "GCTAC":83757, "GCTAG":13396, "GCTTA":94698, "GCTTT":179131, "GCTTC":157871, "GCTTG":79782, "GCTCA":122152, "GCTCT":92805, "GCTCC":83759, "GCTCG":88107, "GCTGA":238525, "GCTGT":164489, "GCTGC":210602, "GCTGG":303518,
"GCCAA":123136, "GCCAT":189372, "GCCAC":142915, "GCCAG":302396, "GCCTA":36069, "GCCTT":109493, "GCCTC":83449, "GCCTG":205899, "GCCCA":100724, "GCCCT":84265, "GCCCC":85948, "GCCCG":137907, "GCCGA":141652, "GCCGT":157172, "GCCGC":222528, "GCCGG":160099,
"GCGAA":168783, "GCGAT":194422, "GCGAC":131498, "GCGAG":98847, "GCGTA":138353, "GCGTT":207618, "GCGTC":136750, "GCGTG":152943, "GCGCA":228855, "GCGCT":196467, "GCGCC":207270, "GCGCG":225313, "GCGGA":141133, "GCGGT":175455, "GCGGC":226050, "GCGGG":143420,
"GGAAA":164104, "GGAAT":102102, "GGAAC":106113, "GGAAG":142836, "GGATA":120360, "GGATT":123221, "GGATC":108533, "GGATG":150035, "GGACA":67840, "GGACT":46939, "GGACC":38037, "GGACG":77814, "GGAGA":89009, "GGAGT":68555, "GGAGC":83056, "GGAGG":51559,
"GGTAA":157422, "GGTAT":115526, "GGTAC":81153, "GGTAG":69861, "GGTTA":118697, "GGTTT":177450, "GGTTC":98693, "GGTTG":131656, "GGTCA":141016, "GGTCT":63158, "GGTCC":38217, "GGTCG":98920, "GGTGA":192966, "GGTGT":117467, "GGTGC":133672, "GGTGG":148044,
"GGCAA":217881, "GGCAT":161917, "GGCAC":110242, "GGCAG":195635, "GGCTA":76242, "GGCTT":145440, "GGCTC":69449, "GGCTG":188713, "GGCCA":107210, "GGCCT":79195, "GGCCC":50434, "GGCCG":78438, "GGCGA":202139, "GGCGT":189990, "GGCGC":206871, "GGCGG":211628,
"GGGAA":118117, "GGGAT":118115, "GGGAC":42518, "GGGAG":59714, "GGGTA":86500, "GGGTT":98685, "GGGTC":51917, "GGGTG":100452, "GGGCA":122635, "GGGCT":97286, "GGGCC":51806, "GGGCG":140578, "GGGGA":91803, "GGGGT":80214, "GGGGC":88994, "GGGGG":137078
},
"overrepresented_sequences": {
}
},
"read2_before_filtering": {
"total_reads": 500113,
"total_bases": 121018444,
"q20_bases": 108396804,
"q30_bases": 102607162,
"total_cycles": 251,
"quality_curves": {
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"AAGAA":142467, "AAGAT":105987, "AAGAC":73509, "AAGAG":89424, "AAGTA":56566, "AAGTT":96465, "AAGTC":68620, "AAGTG":90777, "AAGCA":115951, "AAGCT":84874, "AAGCC":140932, "AAGCG":156759, "AAGGA":71566, "AAGGT":96279, "AAGGC":108405, "AAGGG":83073,
"ATAAA":174308, "ATAAT":118390, "ATAAC":123547, "ATAAG":73085, "ATATA":62418, "ATATT":144680, "ATATC":145185, "ATATG":92036, "ATACA":78084, "ATACT":62564, "ATACC":118776, "ATACG":88025, "ATAGA":52858, "ATAGT":56283, "ATAGC":91344, "ATAGG":32865,
"ATTAA":142151, "ATTAT":121821, "ATTAC":120385, "ATTAG":43832, "ATTTA":119421, "ATTTT":223137, "ATTTC":153556, "ATTTG":118590, "ATTCA":139668, "ATTCT":99575, "ATTCC":102843, "ATTCG":100691, "ATTGA":134219, "ATTGT":99343, "ATTGC":166224, "ATTGG":84949,
"ATCAA":161808, "ATCAT":150523, "ATCAC":158150, "ATCAG":194763, "ATCTA":42000, "ATCTT":108089, "ATCTC":98558, "ATCTG":151484, "ATCCA":140476, "ATCCT":103422, "ATCCC":120838, "ATCCG":144923, "ATCGA":127662, "ATCGT":118583, "ATCGC":192395, "ATCGG":137686,
"ATGAA":151996, "ATGAT":147886, "ATGAC":131186, "ATGAG":82021, "ATGTA":59341, "ATGTT":123719, "ATGTC":89164, "ATGTG":86098, "ATGCA":123302, "ATGCT":115392, "ATGCC":162635, "ATGCG":148891, "ATGGA":98470, "ATGGT":129393, "ATGGC":187571, "ATGGG":84408,
"ACAAA":139400, "ACAAT":100368, "ACAAC":134428, "ACAAG":59610, "ACATA":58899, "ACATT":98032, "ACATC":126205, "ACATG":82897, "ACACA":68931, "ACACT":66231, "ACACC":124511, "ACACG":75544, "ACAGA":91397, "ACAGT":80317, "ACAGC":166798, "ACAGG":124658,
"ACTAA":53207, "ACTAT":59628, "ACTAC":60178, "ACTAG":9569, "ACTTA":64353, "ACTTT":110174, "ACTTC":103883, "ACTTG":48070, "ACTCA":82901, "ACTCT":63786, "ACTCC":72741, "ACTCG":48498, "ACTGA":119699, "ACTGT":82371, "ACTGC":142238, "ACTGG":183006,
"ACCAA":114259, "ACCAT":134346, "ACCAC":143008, "ACCAG":193422, "ACCTA":33145, "ACCTT":104275, "ACCTC":66948, "ACCTG":159700, "ACCCA":90093, "ACCCT":65859, "ACCCC":85298, "ACCCG":117650, "ACCGA":131268, "ACCGT":139938, "ACCGC":183496, "ACCGG":164367,
"ACGAA":103078, "ACGAT":114984, "ACGAC":97035, "ACGAG":53834, "ACGTA":76878, "ACGTT":144503, "ACGTC":91423, "ACGTG":79455, "ACGCA":142173, "ACGCT":151245, "ACGCC":195898, "ACGCG":144984, "ACGGA":93491, "ACGGT":134344, "ACGGC":158673, "ACGGG":96786,
"AGAAA":161191, "AGAAT":96118, "AGAAC":110348, "AGAAG":110209, "AGATA":97774, "AGATT":94774, "AGATC":91183, "AGATG":105749, "AGACA":76230, "AGACT":49367, "AGACC":63345, "AGACG":95335, "AGAGA":78723, "AGAGT":59155, "AGAGC":90602, "AGAGG":60321,
"AGTAA":87276, "AGTAT":58545, "AGTAC":69706, "AGTAG":37097, "AGTTA":74468, "AGTTT":117122, "AGTTC":104996, "AGTTG":98125, "AGTCA":77140, "AGTCT":47866, "AGTCC":46220, "AGTCG":71769, "AGTGA":99261, "AGTGT":60844, "AGTGC":102779, "AGTGG":91439,
"AGCAA":159457, "AGCAT":112971, "AGCAC":115612, "AGCAG":177713, "AGCTA":49857, "AGCTT":85508, "AGCTC":80504, "AGCTG":152621, "AGCCA":156821, "AGCCT":97053, "AGCCC":97779, "AGCCG":128511, "AGCGA":144914, "AGCGT":149625, "AGCGC":197328, "AGCGG":166260,
"AGGAA":104316, "AGGAT":100445, "AGGAC":43577, "AGGAG":60832, "AGGTA":75139, "AGGTT":101332, "AGGTC":63416, "AGGTG":102790, "AGGCA":105938, "AGGCT":92721, "AGGCC":79235, "AGGCG":147713, "AGGGA":69773, "AGGGT":61439, "AGGGC":86887, "AGGGG":66340,
"TAAAA":180379, "TAAAT":116727, "TAAAC":124766, "TAAAG":118381, "TAATA":83928, "TAATT":94275, "TAATC":118001, "TAATG":126617, "TAACA":88904, "TAACT":76164, "TAACC":118064, "TAACG":144139, "TAAGA":51632, "TAAGT":62447, "TAAGC":90834, "TAAGG":59959,
"TATAA":65054, "TATAT":62071, "TATAC":54682, "TATAG":36513, "TATTA":84914, "TATTT":137889, "TATTC":127338, "TATTG":125676, "TATCA":132222, "TATCT":101565, "TATCC":120646, "TATCG":146950, "TATGA":82317, "TATGT":58420, "TATGC":101555, "TATGG":92772,
"TACAA":67843, "TACAT":62472, "TACAC":60665, "TACAG":99849, "TACTA":28052, "TACTT":60277, "TACTC":58234, "TACTG":121294, "TACCA":104028, "TACCT":81366, "TACCC":89352, "TACCG":159469, "TACGA":62036, "TACGT":77806, "TACGC":135096, "TACGG":87171,
"TAGAA":48377, "TAGAT":40492, "TAGAC":30386, "TAGAG":33593, "TAGTA":26468, "TAGTT":45718, "TAGTC":38444, "TAGTG":64860, "TAGCA":49959, "TAGCT":49111, "TAGCC":74583, "TAGCG":98664, "TAGGA":21439, "TAGGT":30333, "TAGGC":36367, "TAGGG":24749,
"TTAAA":154452, "TTAAT":142781, "TTAAC":143242, "TTAAG":80847, "TTATA":65449, "TTATT":153135, "TTATC":173315, "TTATG":107843, "TTACA":86058, "TTACT":92782, "TTACC":158349, "TTACG":122617, "TTAGA":33555, "TTAGT":52788, "TTAGC":81264, "TTAGG":30265,
"TTTAA":153281, "TTTAT":175957, "TTTAC":148059, "TTTAG":69522, "TTTTA":182905, "TTTTT":339958, "TTTTC":243692, "TTTTG":210461, "TTTCA":204125, "TTTCT":168352, "TTTCC":167166, "TTTCG":151854, "TTTGA":140756, "TTTGT":140069, "TTTGC":215970, "TTTGG":109758,
"TTCAA":124456, "TTCAT":152770, "TTCAC":155051, "TTCAG":216689, "TTCTA":52059, "TTCTT":148791, "TTCTC":114365, "TTCTG":186098, "TTCCA":145638, "TTCCT":109028, "TTCCC":122086, "TTCCG":152630, "TTCGA":86133, "TTCGT":106157, "TTCGC":169419, "TTCGG":112195,
"TTGAA":125155, "TTGAT":160420, "TTGAC":87137, "TTGAG":104257, "TTGTA":65862, "TTGTT":156710, "TTGTC":105497, "TTGTG":97662, "TTGCA":123735, "TTGCT":163960, "TTGCC":214163, "TTGCG":163051, "TTGGA":40419, "TTGGT":113435, "TTGGC":121982, "TTGGG":69556,
"TCAAA":141050, "TCAAT":133991, "TCAAC":143055, "TCAAG":64323, "TCATA":83714, "TCATT":128219, "TCATC":190204, "TCATG":120254, "TCACA":74299, "TCACT":105128, "TCACC":196570, "TCACG":118982, "TCAGA":125135, "TCAGT":117002, "TCAGC":240546, "TCAGG":182453,
"TCTAA":34886, "TCTAT":53474, "TCTAC":61845, "TCTAG":8912, "TCTTA":54508, "TCTTT":156612, "TCTTC":158919, "TCTTG":60972, "TCTCA":69751, "TCTCT":85798, "TCTCC":93907, "TCTCG":76479, "TCTGA":129271, "TCTGT":92361, "TCTGC":175562, "TCTGG":190070,
"TCCAA":45068, "TCCAT":102552, "TCCAC":107209, "TCCAG":184149, "TCCTA":22300, "TCCTT":76074, "TCCTC":73230, "TCCTG":156660, "TCCCA":74546, "TCCCT":72871, "TCCCC":101469, "TCCCG":110089, "TCCGA":55869, "TCCGT":97093, "TCCGC":148365, "TCCGG":171490,
"TCGAA":86091, "TCGAT":129465, "TCGAC":90094, "TCGAG":63688, "TCGTA":61804, "TCGTT":116878, "TCGTC":115854, "TCGTG":83164, "TCGCA":97919, "TCGCT":148608, "TCGCC":202528, "TCGCG":144922, "TCGGA":53196, "TCGGT":127208, "TCGGC":144995, "TCGGG":90156,
"TGAAA":200856, "TGAAT":138948, "TGAAC":145971, "TGAAG":153916, "TGATA":131138, "TGATT":172180, "TGATC":126815, "TGATG":224823, "TGACA":106367, "TGACT":79126, "TGACC":136544, "TGACG":170380, "TGAGA":67629, "TGAGT":76927, "TGAGC":118476, "TGAGG":78607,
"TGTAA":85983, "TGTAT":74513, "TGTAC":68199, "TGTAG":54713, "TGTTA":89039, "TGTTT":178418, "TGTTC":135061, "TGTTG":162864, "TGTCA":106780, "TGTCT":73503, "TGTCC":67130, "TGTCG":126958, "TGTGA":71660, "TGTGT":64845, "TGTGC":102536, "TGTGG":107573,
"TGCAA":125438, "TGCAT":121501, "TGCAC":103760, "TGCAG":162824, "TGCTA":51712, "TGCTT":118092, "TGCTC":123067, "TGCTG":285399, "TGCCA":201830, "TGCCT":109418, "TGCCC":125319, "TGCCG":254300, "TGCGA":97724, "TGCGT":142577, "TGCGC":226089, "TGCGG":165384,
"TGGAA":141162, "TGGAT":134737, "TGGAC":62057, "TGGAG":85911, "TGGTA":98435, "TGGTT":160851, "TGGTC":117040, "TGGTG":194331, "TGGCA":197894, "TGGCT":159909, "TGGCC":110276, "TGGCG":284958, "TGGGA":73918, "TGGGT":88041, "TGGGC":102775, "TGGGG":109782,
"CAAAA":209157, "CAAAT":121198, "CAAAC":139222, "CAAAG":134093, "CAATA":123612, "CAATT":103718, "CAATC":121613, "CAATG":138638, "CAACA":171233, "CAACT":104002, "CAACC":134964, "CAACG":171423, "CAAGA":60666, "CAAGT":47000, "CAAGC":80278, "CAAGG":69995,
"CATAA":106655, "CATAT":92441, "CATAC":82835, "CATAG":52393, "CATTA":127936, "CATTT":149708, "CATTC":112321, "CATTG":137828, "CATCA":228895, "CATCT":110100, "CATCC":155149, "CATCG":168597, "CATGA":120185, "CATGT":80096, "CATGC":113491, "CATGG":108089,
"CACAA":99258, "CACAT":89426, "CACAC":74980, "CACAG":95232, "CACTA":66989, "CACTT":96375, "CACTC":74553, "CACTG":137228, "CACCA":203268, "CACCT":108115, "CACCC":112295, "CACCG":195313, "CACGA":82082, "CACGT":82027, "CACGC":154448, "CACGG":111574,
"CAGAA":182338, "CAGAT":147874, "CAGAC":143474, "CAGAG":97901, "CAGTA":115158, "CAGTT":168555, "CAGTC":92766, "CAGTG":131624, "CAGCA":283254, "CAGCT":154831, "CAGCC":192932, "CAGCG":293364, "CAGGA":150724, "CAGGT":152469, "CAGGC":201702, "CAGGG":128964,
"CTAAA":69860, "CTAAT":44664, "CTAAC":56349, "CTAAG":30390, "CTATA":37749, "CTATT":68859, "CTATC":85437, "CTATG":54550, "CTACA":56503, "CTACT":40602, "CTACC":75391, "CTACG":77493, "CTAGA":9058, "CTAGT":9412, "CTAGC":15873, "CTAGG":12155,
"CTTAA":83943, "CTTAT":76660, "CTTAC":86105, "CTTAG":30960, "CTTTA":120694, "CTTTT":165620, "CTTTC":148056, "CTTTG":139185, "CTTCA":156655, "CTTCT":119657, "CTTCC":149541, "CTTCG":119573, "CTTGA":65617, "CTTGT":60021, "CTTGC":103191, "CTTGG":34840,
"CTCAA":109243, "CTCAT":87757, "CTCAC":75695, "CTCAG":87242, "CTCTA":34727, "CTCTT":97866, "CTCTC":72126, "CTCTG":106313, "CTCCA":91427, "CTCCT":69963, "CTCCC":68849, "CTCCG":88923, "CTCGA":66662, "CTCGT":59033, "CTCGC":100462, "CTCGG":61738,
"CTGAA":215943, "CTGAT":195464, "CTGAC":173497, "CTGAG":88018, "CTGTA":100779, "CTGTT":164572, "CTGTC":109687, "CTGTG":94429, "CTGCA":164856, "CTGCT":182521, "CTGCC":203175, "CTGCG":187569, "CTGGA":185196, "CTGGT":192594, "CTGGC":302629, "CTGGG":138271,
"CCAAA":109733, "CCAAT":85059, "CCAAC":122950, "CCAAG":34897, "CCATA":91771, "CCATT":140720, "CCATC":168132, "CCATG":109665, "CCACA":112532, "CCACT":95509, "CCACC":157548, "CCACG":116482, "CCAGA":187746, "CCAGT":175211, "CCAGC":299313, "CCAGG":140518,
"CCTAA":30300, "CCTAT":36527, "CCTAC":41233, "CCTAG":12921, "CCTTA":62802, "CCTTT":125192, "CCTTC":119775, "CCTTG":73455, "CCTCA":86916, "CCTCT":63941, "CCTCC":62441, "CCTCG":73940, "CCTGA":190371, "CCTGT":126222, "CCTGC":193431, "CCTGG":145618,
"CCCAA":70086, "CCCAT":83346, "CCCAC":85609, "CCCAG":132688, "CCCTA":27051, "CCCTT":85880, "CCCTC":56491, "CCCTG":131437, "CCCCA":106936, "CCCCT":71087, "CCCCC":101525, "CCCCG":110849, "CCCGA":93079, "CCCGT":97648, "CCCGC":154558, "CCCGG":137543,
"CCGAA":114424, "CCGAT":140494, "CCGAC":109831, "CCGAG":59926, "CCGTA":89000, "CCGTT":161610, "CCGTC":129550, "CCGTG":114348, "CCGCA":173171, "CCGCT":174498, "CCGCC":222569, "CCGCG":151612, "CCGGA":170954, "CCGGT":162813, "CCGGC":169680, "CCGGG":138065,
"CGAAA":146770, "CGAAT":98162, "CGAAC":104985, "CGAAG":115781, "CGATA":143249, "CGATT":135260, "CGATC":128188, "CGATG":167225, "CGACA":128504, "CGACT":75915, "CGACC":99904, "CGACG":123166, "CGAGA":75203, "CGAGT":45894, "CGAGC":85769, "CGAGG":67263,
"CGTAA":121173, "CGTAT":87623, "CGTAC":75843, "CGTAG":76578, "CGTTA":144298, "CGTTT":185863, "CGTTC":129214, "CGTTG":167456, "CGTCA":171259, "CGTCT":98349, "CGTCC":81174, "CGTCG":122824, "CGTGA":116490, "CGTGT":72907, "CGTGC":120012, "CGTGG":115880,
"CGCAA":165784, "CGCAT":149765, "CGCAC":137308, "CGCAG":184429, "CGCTA":99017, "CGCTT":165645, "CGCTC":113622, "CGCTG":297600, "CGCCA":285083, "CGCCT":155111, "CGCCC":151429, "CGCCG":243350, "CGCGA":143359, "CGCGT":143039, "CGCGC":229889, "CGCGG":149305,
"CGGAA":147024, "CGGAT":138849, "CGGAC":85984, "CGGAG":84777, "CGGTA":151228, "CGGTT":156913, "CGGTC":106167, "CGGTG":181977, "CGGCA":246565, "CGGCT":130265, "CGGCC":87598, "CGGCG":238154, "CGGGA":105267, "CGGGT":109633, "CGGGC":143102, "CGGGG":117221,
"GAAAA":234448, "GAAAT":150915, "GAAAC":144359, "GAAAG":141503, "GAATA":127527, "GAATT":101911, "GAATC":98120, "GAATG":110707, "GAACA":136041, "GAACT":106436, "GAACC":100025, "GAACG":127317, "GAAGA":151806, "GAAGT":98854, "GAAGC":153162, "GAAGG":114126,
"GATAA":168571, "GATAT":144395, "GATAC":96753, "GATAG":80169, "GATTA":121344, "GATTT":186596, "GATTC":99268, "GATTG":119457, "GATCA":129895, "GATCT":90627, "GATCC":107355, "GATCG":128888, "GATGA":184548, "GATGT":122432, "GATGC":173517, "GATGG":163692,
"GACAA":108853, "GACAT":87872, "GACAC":74841, "GACAG":107667, "GACTA":40354, "GACTT":70804, "GACTC":47109, "GACTG":96104, "GACCA":115063, "GACCT":66632, "GACCC":53575, "GACCG":107090, "GACGA":112036, "GACGT":90132, "GACGC":136646, "GACGG":128381,
"GAGAA":107130, "GAGAT":95560, "GAGAC":37242, "GAGAG":69387, "GAGTA":54937, "GAGTT":84894, "GAGTC":42811, "GAGTG":68437, "GAGCA":117896, "GAGCT":79137, "GAGCC":71330, "GAGCG":111890, "GAGGA":66428, "GAGGT":63630, "GAGGC":79300, "GAGGG":50149,
"GTAAA":144058, "GTAAT":117989, "GTAAC":104544, "GTAAG":81946, "GTATA":53313, "GTATT":110122, "GTATC":96907, "GTATG":81839, "GTACA":71129, "GTACT":71655, "GTACC":81488, "GTACG":75568, "GTAGA":57833, "GTAGT":57112, "GTAGC":83929, "GTAGG":38258,
"GTTAA":143847, "GTTAT":125656, "GTTAC":104574, "GTTAG":54515, "GTTTA":125110, "GTTTT":251982, "GTTTC":145168, "GTTTG":140853, "GTTCA":149962, "GTTCT":112671, "GTTCC":108240, "GTTCG":103738, "GTTGA":137509, "GTTGT":126807, "GTTGC":178826, "GTTGG":117848,
"GTCAA":88779, "GTCAT":131743, "GTCAC":105564, "GTCAG":169053, "GTCTA":30674, "GTCTT":76690, "GTCTC":39834, "GTCTG":143043, "GTCCA":61951, "GTCCT":44341, "GTCCC":46225, "GTCCG":87981, "GTCGA":89787, "GTCGT":94189, "GTCGC":131637, "GTCGG":106194,
"GTGAA":149398, "GTGAT":152821, "GTGAC":101379, "GTGAG":69237, "GTGTA":58241, "GTGTT":121885, "GTGTC":69881, "GTGTG":69890, "GTGCA":103069, "GTGCT":116027, "GTGCC":110922, "GTGCG":135397, "GTGGA":101017, "GTGGT":136213, "GTGGC":141385, "GTGGG":85710,
"GCAAA":215754, "GCAAT":167525, "GCAAC":180590, "GCAAG":100170, "GCATA":99776, "GCATT":160434, "GCATC":175927, "GCATG":110013, "GCACA":104029, "GCACT":106954, "GCACC":139063, "GCACG":120656, "GCAGA":169096, "GCAGT":135149, "GCAGC":217446, "GCAGG":189415,
"GCTAA":83006, "GCTAT":95063, "GCTAC":84940, "GCTAG":15174, "GCTTA":95378, "GCTTT":180801, "GCTTC":159165, "GCTTG":82003, "GCTCA":119931, "GCTCT":94914, "GCTCC":87411, "GCTCG":89646, "GCTGA":234882, "GCTGT":164668, "GCTGC":224881, "GCTGG":303298,
"GCCAA":124397, "GCCAT":188842, "GCCAC":145282, "GCCAG":295116, "GCCTA":38286, "GCCTT":113712, "GCCTC":89183, "GCCTG":206610, "GCCCA":99993, "GCCCT":88942, "GCCCC":100455, "GCCCG":145649, "GCCGA":145622, "GCCGT":158945, "GCCGC":235385, "GCCGG":171282,
"GCGAA":164203, "GCGAT":190010, "GCGAC":130863, "GCGAG":98203, "GCGTA":133945, "GCGTT":204776, "GCGTC":135847, "GCGTG":149971, "GCGCA":225520, "GCGCT":200291, "GCGCC":213694, "GCGCG":227147, "GCGGA":140220, "GCGGT":172062, "GCGGC":229436, "GCGGG":154168,
"GGAAA":163893, "GGAAT":102540, "GGAAC":106978, "GGAAG":139557, "GGATA":116431, "GGATT":122743, "GGATC":107602, "GGATG":147087, "GGACA":68348, "GGACT":48805, "GGACC":41353, "GGACG":79647, "GGAGA":88060, "GGAGT":67670, "GGAGC":84009, "GGAGG":54785,
"GGTAA":152665, "GGTAT":113242, "GGTAC":80581, "GGTAG":68344, "GGTTA":117555, "GGTTT":177557, "GGTTC":98961, "GGTTG":131212, "GGTCA":137372, "GGTCT":65573, "GGTCC":42133, "GGTCG":99708, "GGTGA":184361, "GGTGT":115168, "GGTGC":133872, "GGTGG":149675,
"GGCAA":215041, "GGCAT":159763, "GGCAC":112653, "GGCAG":188631, "GGCTA":77201, "GGCTT":147025, "GGCTC":72579, "GGCTG":190065, "GGCCA":109531, "GGCCT":83246, "GGCCC":58452, "GGCCG":87166, "GGCGA":198449, "GGCGT":186990, "GGCGC":211757, "GGCGG":218628,
"GGGAA":121773, "GGGAT":117386, "GGGAC":46097, "GGGAG":64229, "GGGTA":88108, "GGGTT":103844, "GGGTC":55617, "GGGTG":103825, "GGGCA":125384, "GGGCT":100578, "GGGCC":59797, "GGGCG":147447, "GGGGA":100690, "GGGGT":89934, "GGGGC":99111, "GGGGG":109721
},
"overrepresented_sequences": {
}
},
"read1_after_filtering": {
"total_reads": 488400,
"total_bases": 118068708,
"q20_bases": 114297868,
"q30_bases": 112098532,
"total_cycles": 251,
"quality_curves": {
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"ATAAA":174405, "ATAAT":119183, "ATAAC":123278, "ATAAG":72993, "ATATA":61478, "ATATT":142348, "ATATC":143867, "ATATG":91040, "ATACA":76727, "ATACT":60125, "ATACC":117261, "ATACG":88080, "ATAGA":53004, "ATAGT":56914, "ATAGC":91060, "ATAGG":32035,
"ATTAA":141776, "ATTAT":120066, "ATTAC":118047, "ATTAG":43058, "ATTTA":117489, "ATTTT":219530, "ATTTC":151684, "ATTTG":117857, "ATTCA":138008, "ATTCT":96215, "ATTCC":99669, "ATTCG":98702, "ATTGA":134273, "ATTGT":98574, "ATTGC":165291, "ATTGG":83648,
"ATCAA":161843, "ATCAT":149331, "ATCAC":156311, "ATCAG":196071, "ATCTA":39879, "ATCTT":105866, "ATCTC":95455, "ATCTG":149107, "ATCCA":139261, "ATCCT":101066, "ATCCC":115756, "ATCCG":141926, "ATCGA":128503, "ATCGT":118010, "ATCGC":189488, "ATCGG":136238,
"ATGAA":151732, "ATGAT":149388, "ATGAC":130462, "ATGAG":82797, "ATGTA":59241, "ATGTT":124369, "ATGTC":88372, "ATGTG":85897, "ATGCA":123007, "ATGCT":111806, "ATGCC":159067, "ATGCG":147171, "ATGGA":99116, "ATGGT":129932, "ATGGC":186903, "ATGGG":80598,
"ACAAA":137397, "ACAAT":99674, "ACAAC":130127, "ACAAG":57559, "ACATA":57510, "ACATT":96095, "ACATC":124207, "ACATG":81040, "ACACA":64472, "ACACT":63785, "ACACC":118231, "ACACG":72426, "ACAGA":91406, "ACAGT":79822, "ACAGC":165106, "ACAGG":123619,
"ACTAA":52126, "ACTAT":57180, "ACTAC":58584, "ACTAG":8412, "ACTTA":62383, "ACTTT":106922, "ACTTC":101687, "ACTTG":46227, "ACTCA":81893, "ACTCT":60898, "ACTCC":68123, "ACTCG":45982, "ACTGA":118806, "ACTGT":81312, "ACTGC":137652, "ACTGG":181496,
"ACCAA":111031, "ACCAT":133893, "ACCAC":138340, "ACCAG":192962, "ACCTA":30866, "ACCTT":101004, "ACCTC":62752, "ACCTG":156628, "ACCCA":86222, "ACCCT":60042, "ACCCC":70869, "ACCCG":109422, "ACCGA":130466, "ACCGT":137230, "ACCGC":173050, "ACCGG":159286,
"ACGAA":103359, "ACGAT":114875, "ACGAC":94634, "ACGAG":52791, "ACGTA":76005, "ACGTT":145071, "ACGTC":90207, "ACGTG":79698, "ACGCA":140248, "ACGCT":145306, "ACGCC":187746, "ACGCG":140875, "ACGGA":92878, "ACGGT":135385, "ACGGC":155222, "ACGGG":91724,
"AGAAA":162298, "AGAAT":96299, "AGAAC":110239, "AGAAG":111164, "AGATA":99607, "AGATT":94386, "AGATC":91021, "AGATG":105884, "AGACA":74901, "AGACT":48449, "AGACC":61576, "AGACG":96152, "AGAGA":79011, "AGAGT":60112, "AGAGC":89415, "AGAGG":58712,
"AGTAA":88295, "AGTAT":59162, "AGTAC":69770, "AGTAG":37218, "AGTTA":74848, "AGTTT":118081, "AGTTC":105125, "AGTTG":99458, "AGTCA":76928, "AGTCT":46923, "AGTCC":45018, "AGTCG":71947, "AGTGA":101377, "AGTGT":61278, "AGTGC":103604, "AGTGG":91673,
"AGCAA":157484, "AGCAT":113544, "AGCAC":113651, "AGCAG":178098, "AGCTA":47767, "AGCTT":83180, "AGCTC":79434, "AGCTG":149916, "AGCCA":155907, "AGCCT":94163, "AGCCC":92966, "AGCCG":123059, "AGCGA":145966, "AGCGT":150348, "AGCGC":194852, "AGCGG":164958,
"AGGAA":103211, "AGGAT":100124, "AGGAC":41138, "AGGAG":60097, "AGGTA":76999, "AGGTT":102285, "AGGTC":62903, "AGGTG":103732, "AGGCA":104877, "AGGCT":90713, "AGGCC":75702, "AGGCG":144561, "AGGGA":67128, "AGGGT":59681, "AGGGC":82938, "AGGGG":58587,
"TAAAA":180373, "TAAAT":116533, "TAAAC":122523, "TAAAG":118683, "TAATA":83318, "TAATT":92495, "TAATC":117220, "TAATG":127622, "TAACA":87466, "TAACT":74721, "TAACC":115568, "TAACG":143962, "TAAGA":51392, "TAAGT":63656, "TAAGC":89929, "TAAGG":58262,
"TATAA":63662, "TATAT":59939, "TATAC":52661, "TATAG":35929, "TATTA":82830, "TATTT":134740, "TATTC":124129, "TATTG":124223, "TATCA":130798, "TATCT":99018, "TATCC":116741, "TATCG":145928, "TATGA":82132, "TATGT":57436, "TATGC":99529, "TATGG":91309,
"TACAA":66047, "TACAT":60888, "TACAC":56918, "TACAG":100115, "TACTA":26575, "TACTT":57642, "TACTC":55521, "TACTG":119806, "TACCA":102816, "TACCT":78368, "TACCC":84594, "TACCG":156735, "TACGA":61041, "TACGT":78362, "TACGC":132617, "TACGG":86661,
"TAGAA":48810, "TAGAT":40185, "TAGAC":29533, "TAGAG":32782, "TAGTA":26353, "TAGTT":45331, "TAGTC":37640, "TAGTG":64249, "TAGCA":48572, "TAGCT":47372, "TAGCC":72901, "TAGCG":97982, "TAGGA":20626, "TAGGT":30157, "TAGGC":34433, "TAGGG":22799,
"TTAAA":153235, "TTAAT":140970, "TTAAC":141832, "TTAAG":80360, "TTATA":62537, "TTATT":149735, "TTATC":169493, "TTATG":105580, "TTACA":83834, "TTACT":90241, "TTACC":154927, "TTACG":120977, "TTAGA":33314, "TTAGT":51369, "TTAGC":80040, "TTAGG":28642,
"TTTAA":151133, "TTTAT":171825, "TTTAC":144958, "TTTAG":67787, "TTTTA":178826, "TTTTT":323731, "TTTTC":235519, "TTTTG":207510, "TTTCA":203199, "TTTCT":161920, "TTTCC":159584, "TTTCG":148563, "TTTGA":139762, "TTTGT":137495, "TTTGC":213359, "TTTGG":106173,
"TTCAA":124862, "TTCAT":151820, "TTCAC":152679, "TTCAG":215951, "TTCTA":49380, "TTCTT":143617, "TTCTC":108523, "TTCTG":181421, "TTCCA":141806, "TTCCT":103611, "TTCCC":112931, "TTCCG":147052, "TTCGA":87017, "TTCGT":103699, "TTCGC":164945, "TTCGG":109040,
"TTGAA":125047, "TTGAT":160822, "TTGAC":84804, "TTGAG":103766, "TTGTA":64461, "TTGTT":154716, "TTGTC":104438, "TTGTG":96364, "TTGCA":121806, "TTGCT":160760, "TTGCC":210653, "TTGCG":160512, "TTGGA":39268, "TTGGT":112640, "TTGGC":119164, "TTGGG":64741,
"TCAAA":141384, "TCAAT":134549, "TCAAC":141754, "TCAAG":63618, "TCATA":82352, "TCATT":126464, "TCATC":187667, "TCATG":119531, "TCACA":72449, "TCACT":101908, "TCACC":192574, "TCACG":117080, "TCAGA":127558, "TCAGT":117717, "TCAGC":237980, "TCAGG":184572,
"TCTAA":32688, "TCTAT":51713, "TCTAC":58965, "TCTAG":7447, "TCTTA":51360, "TCTTT":151484, "TCTTC":154454, "TCTTG":57432, "TCTCA":67179, "TCTCT":81406, "TCTCC":86849, "TCTCG":73781, "TCTGA":126990, "TCTGT":88560, "TCTGC":169029, "TCTGG":187293,
"TCCAA":41559, "TCCAT":98963, "TCCAC":102866, "TCCAG":184173, "TCCTA":19772, "TCCTT":70862, "TCCTC":66983, "TCCTG":152202, "TCCCA":70946, "TCCCT":66858, "TCCCC":88691, "TCCCG":101486, "TCCGA":52795, "TCCGT":94381, "TCCGC":139211, "TCCGG":166598,
"TCGAA":86424, "TCGAT":129968, "TCGAC":88674, "TCGAG":63759, "TCGTA":60900, "TCGTT":114135, "TCGTC":113545, "TCGTG":81610, "TCGCA":96141, "TCGCT":143492, "TCGCC":196495, "TCGCG":140333, "TCGGA":52477, "TCGGT":127110, "TCGGC":140902, "TCGGG":85620,
"TGAAA":201449, "TGAAT":139104, "TGAAC":146054, "TGAAG":155319, "TGATA":131857, "TGATT":172845, "TGATC":127490, "TGATG":226710, "TGACA":105083, "TGACT":77201, "TGACC":134168, "TGACG":166664, "TGAGA":67052, "TGAGT":77999, "TGAGC":117795, "TGAGG":77103,
"TGTAA":84867, "TGTAT":73974, "TGTAC":67675, "TGTAG":53747, "TGTTA":88747, "TGTTT":175881, "TGTTC":133288, "TGTTG":163238, "TGTCA":105575, "TGTCT":71013, "TGTCC":64440, "TGTCG":125941, "TGTGA":70696, "TGTGT":63612, "TGTGC":99625, "TGTGG":106640,
"TGCAA":123210, "TGCAT":119643, "TGCAC":100380, "TGCAG":161759, "TGCTA":49063, "TGCTT":114234, "TGCTC":119453, "TGCTG":279217, "TGCCA":197650, "TGCCT":103067, "TGCCC":117396, "TGCCG":240252, "TGCGA":97474, "TGCGT":142865, "TGCGC":218755, "TGCGG":160897,
"TGGAA":141787, "TGGAT":134968, "TGGAC":59557, "TGGAG":85988, "TGGTA":99706, "TGGTT":159236, "TGGTC":114927, "TGGTG":195883, "TGGCA":199837, "TGGCT":156100, "TGGCC":103443, "TGGCG":281236, "TGGGA":72237, "TGGGT":83900, "TGGGC":96666, "TGGGG":96684,
"CAAAA":204839, "CAAAT":118603, "CAAAC":135776, "CAAAG":133858, "CAATA":122963, "CAATT":102202, "CAATC":120087, "CAATG":138244, "CAACA":167474, "CAACT":101974, "CAACC":128283, "CAACG":168677, "CAAGA":58562, "CAAGT":45505, "CAAGC":77796, "CAAGG":67803,
"CATAA":105543, "CATAT":91075, "CATAC":80537, "CATAG":51986, "CATTA":126526, "CATTT":146731, "CATTC":109526, "CATTG":137424, "CATCA":228021, "CATCT":106152, "CATCC":150433, "CATCG":167196, "CATGA":119452, "CATGT":79382, "CATGC":109951, "CATGG":106459,
"CACAA":96226, "CACAT":86852, "CACAC":69080, "CACAG":92914, "CACTA":64833, "CACTT":93235, "CACTC":71092, "CACTG":133446, "CACCA":199138, "CACCT":104208, "CACCC":99346, "CACCG":187684, "CACGA":81853, "CACGT":79665, "CACGC":148902, "CACGG":109303,
"CAGAA":183905, "CAGAT":149926, "CAGAC":142932, "CAGAG":98416, "CAGTA":116629, "CAGTT":170963, "CAGTC":91633, "CAGTG":132909, "CAGCA":283159, "CAGCT":151976, "CAGCC":185837, "CAGCG":294461, "CAGGA":150614, "CAGGT":154379, "CAGGC":198942, "CAGGG":124028,
"CTAAA":67948, "CTAAT":42826, "CTAAC":53152, "CTAAG":29019, "CTATA":35760, "CTATT":64981, "CTATC":81992, "CTATG":53225, "CTACA":53922, "CTACT":37955, "CTACC":70199, "CTACG":76154, "CTAGA":7734, "CTAGT":8197, "CTAGC":12910, "CTAGG":11139,
"CTTAA":80986, "CTTAT":72525, "CTTAC":82736, "CTTAG":29735, "CTTTA":117568, "CTTTT":156102, "CTTTC":142722, "CTTTG":135001, "CTTCA":155981, "CTTCT":113876, "CTTCC":140864, "CTTCG":116462, "CTTGA":62799, "CTTGT":56971, "CTTGC":97459, "CTTGG":31550,
"CTCAA":108504, "CTCAT":84768, "CTCAC":71442, "CTCAG":87050, "CTCTA":32835, "CTCTT":92653, "CTCTC":68222, "CTCTG":100284, "CTCCA":86415, "CTCCT":62747, "CTCCC":57390, "CTCCG":81710, "CTCGA":64545, "CTCGT":56036, "CTCGC":94692, "CTCGG":57400,
"CTGAA":215862, "CTGAT":194185, "CTGAC":167669, "CTGAG":85500, "CTGTA":98810, "CTGTT":162524, "CTGTC":104407, "CTGTG":91257, "CTGCA":160482, "CTGCT":175529, "CTGCC":180834, "CTGCG":181561, "CTGGA":184598, "CTGGT":191373, "CTGGC":296676, "CTGGG":128733,
"CCAAA":105362, "CCAAT":82425, "CCAAC":116986, "CCAAG":31567, "CCATA":90402, "CCATT":137623, "CCATC":162956, "CCATG":106751, "CCACA":107895, "CCACT":92236, "CCACC":145229, "CCACG":113549, "CCAGA":188204, "CCAGT":177198, "CCAGC":296253, "CCAGG":137463,
"CCTAA":27953, "CCTAT":33318, "CCTAC":37086, "CCTAG":11084, "CCTTA":58866, "CCTTT":117234, "CCTTC":113102, "CCTTG":67943, "CCTCA":82719, "CCTCT":58668, "CCTCC":48896, "CCTCG":67732, "CCTGA":185778, "CCTGT":122958, "CCTGC":184403, "CCTGG":139271,
"CCCAA":64662, "CCCAT":79056, "CCCAC":77935, "CCCAG":130248, "CCCTA":23303, "CCCTT":77342, "CCCTC":45594, "CCCTG":121728, "CCCCA":96626, "CCCCT":57251, "CCCCC":54146, "CCCCG":90564, "CCCGA":87886, "CCCGT":91248, "CCCGC":132101, "CCCGG":122449,
"CCGAA":111078, "CCGAT":138219, "CCGAC":100237, "CCGAG":58005, "CCGTA":85650, "CCGTT":157544, "CCGTC":123859, "CCGTG":109382, "CCGCA":163528, "CCGCT":160962, "CCGCC":197217, "CCGCG":138575, "CCGGA":167082, "CCGGT":156508, "CCGGC":154898, "CCGGG":122361,
"CGAAA":147354, "CGAAT":97955, "CGAAC":102765, "CGAAG":115908, "CGATA":144280, "CGATT":134262, "CGATC":127103, "CGATG":166033, "CGACA":127129, "CGACT":73483, "CGACC":94111, "CGACG":116701, "CGAGA":74673, "CGAGT":45222, "CGAGC":84588, "CGAGG":65115,
"CGTAA":121142, "CGTAT":87275, "CGTAC":73976, "CGTAG":75073, "CGTTA":142679, "CGTTT":183543, "CGTTC":125451, "CGTTG":167116, "CGTCA":170973, "CGTCT":94521, "CGTCC":76083, "CGTCG":120280, "CGTGA":117672, "CGTGT":71918, "CGTGC":116346, "CGTGG":111966,
"CGCAA":160011, "CGCAT":148363, "CGCAC":132202, "CGCAG":180525, "CGCTA":95233, "CGCTT":159118, "CGCTC":108247, "CGCTG":280418, "CGCCA":280190, "CGCCT":145631, "CGCCC":133189, "CGCCG":223554, "CGCGA":140757, "CGCGT":139913, "CGCGC":217689, "CGCGG":137388,
"CGGAA":144440, "CGGAT":138982, "CGGAC":82216, "CGGAG":82369, "CGGTA":152103, "CGGTT":154265, "CGGTC":101758, "CGGTG":180990, "CGGCA":245133, "CGGCT":123284, "CGGCC":74324, "CGGCG":227242, "CGGGA":100999, "CGGGT":105006, "CGGGC":132395, "CGGGG":94694,
"GAAAA":233290, "GAAAT":151609, "GAAAC":143506, "GAAAG":141504, "GAATA":127213, "GAATT":100622, "GAATC":96695, "GAATG":111148, "GAACA":135341, "GAACT":106180, "GAACC":96393, "GAACG":126211, "GAAGA":153930, "GAAGT":100978, "GAAGC":152648, "GAAGG":112751,
"GATAA":171885, "GATAT":144535, "GATAC":96647, "GATAG":81634, "GATTA":121199, "GATTT":186182, "GATTC":97266, "GATTG":118960, "GATCA":130306, "GATCT":88973, "GATCC":107184, "GATCG":128224, "GATGA":186881, "GATGT":123219, "GATGC":171326, "GATGG":163363,
"GACAA":107134, "GACAT":87224, "GACAC":71793, "GACAG":106822, "GACTA":38897, "GACTT":68777, "GACTC":44235, "GACTG":94254, "GACCA":114271, "GACCT":63021, "GACCC":47798, "GACCG":103012, "GACGA":110602, "GACGT":89733, "GACGC":128861, "GACGG":124670,
"GAGAA":107051, "GAGAT":95758, "GAGAC":36027, "GAGAG":68330, "GAGTA":55275, "GAGTT":84903, "GAGTC":42034, "GAGTG":69477, "GAGCA":118373, "GAGCT":76533, "GAGCC":68681, "GAGCG":110588, "GAGGA":64964, "GAGGT":63339, "GAGGC":76414, "GAGGG":44584,
"GTAAA":144935, "GTAAT":118862, "GTAAC":103799, "GTAAG":82297, "GTATA":53012, "GTATT":109802, "GTATC":96507, "GTATG":81946, "GTACA":70650, "GTACT":70991, "GTACC":79681, "GTACG":75124, "GTAGA":57808, "GTAGT":57336, "GTAGC":82844, "GTAGG":36763,
"GTTAA":144621, "GTTAT":123355, "GTTAC":103479, "GTTAG":53722, "GTTTA":123466, "GTTTT":249558, "GTTTC":142190, "GTTTG":139077, "GTTCA":149992, "GTTCT":109944, "GTTCC":103305, "GTTCG":102994, "GTTGA":138998, "GTTGT":127445, "GTTGC":176849, "GTTGG":116117,
"GTCAA":88012, "GTCAT":130640, "GTCAC":102906, "GTCAG":171730, "GTCTA":29123, "GTCTT":72846, "GTCTC":35909, "GTCTG":140766, "GTCCA":60929, "GTCCT":40923, "GTCCC":40618, "GTCCG":83976, "GTCGA":89914, "GTCGT":92841, "GTCGC":127079, "GTCGG":105311,
"GTGAA":152107, "GTGAT":156561, "GTGAC":100885, "GTGAG":69692, "GTGTA":58648, "GTGTT":121170, "GTGTC":69304, "GTGTG":68557, "GTGCA":101407, "GTGCT":113573, "GTGCC":107363, "GTGCG":133756, "GTGGA":100978, "GTGGT":137254, "GTGGC":138094, "GTGGG":77925,
"GCAAA":211046, "GCAAT":166571, "GCAAC":176693, "GCAAG":97961, "GCATA":98700, "GCATT":159565, "GCATC":174299, "GCATG":108850, "GCACA":101191, "GCACT":103235, "GCACC":132558, "GCACG":118196, "GCAGA":170220, "GCAGT":137306, "GCAGC":215372, "GCAGG":185105,
"GCTAA":80153, "GCTAT":91925, "GCTAC":81653, "GCTAG":13076, "GCTTA":92803, "GCTTT":174831, "GCTTC":154064, "GCTTG":77886, "GCTCA":119501, "GCTCT":90500, "GCTCC":81244, "GCTCG":85825, "GCTGA":233315, "GCTGT":160556, "GCTGC":205217, "GCTGG":296194,
"GCCAA":119934, "GCCAT":184968, "GCCAC":138457, "GCCAG":294448, "GCCTA":35248, "GCCTT":106324, "GCCTC":81005, "GCCTG":200536, "GCCCA":97664, "GCCCT":81565, "GCCCC":81932, "GCCCG":133312, "GCCGA":137748, "GCCGT":152869, "GCCGC":215205, "GCCGG":154639,
"GCGAA":165180, "GCGAT":190084, "GCGAC":128037, "GCGAG":96441, "GCGTA":135362, "GCGTT":202852, "GCGTC":133088, "GCGTG":148792, "GCGCA":223102, "GCGCT":191918, "GCGCC":199785, "GCGCG":218965, "GCGGA":137216, "GCGGT":170583, "GCGGC":218623, "GCGGG":136120,
"GGAAA":160269, "GGAAT":99920, "GGAAC":103605, "GGAAG":139509, "GGATA":117906, "GGATT":120584, "GGATC":105849, "GGATG":146996, "GGACA":66136, "GGACT":45848, "GGACC":36873, "GGACG":75692, "GGAGA":86914, "GGAGT":67113, "GGAGC":80872, "GGAGG":49525,
"GGTAA":154194, "GGTAT":113041, "GGTAC":79447, "GGTAG":68404, "GGTTA":115998, "GGTTT":173064, "GGTTC":96022, "GGTTG":128614, "GGTCA":137532, "GGTCT":61450, "GGTCC":37022, "GGTCG":96362, "GGTGA":188927, "GGTGT":114873, "GGTGC":130375, "GGTGG":143761,
"GGCAA":213151, "GGCAT":158028, "GGCAC":107387, "GGCAG":190451, "GGCTA":74353, "GGCTT":141888, "GGCTC":67607, "GGCTG":183846, "GGCCA":104185, "GGCCT":77011, "GGCCC":48121, "GGCCG":75399, "GGCGA":197128, "GGCGT":185316, "GGCGC":200638, "GGCGG":202160,
"GGGAA":115065, "GGGAT":115159, "GGGAC":41153, "GGGAG":57028, "GGGTA":84463, "GGGTT":95744, "GGGTC":50241, "GGGTG":97136, "GGGCA":119290, "GGGCT":94350, "GGGCC":49334, "GGGCG":134325, "GGGGA":88227, "GGGGT":76735, "GGGGC":83641, "GGGGG":78158
},
"overrepresented_sequences": {
}
},
"read2_after_filtering": {
"total_reads": 488400,
"total_bases": 118059193,
"q20_bases": 107074582,
"q30_bases": 101773234,
"total_cycles": 251,
"quality_curves": {
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"AAGAA":140138, "AAGAT":104560, "AAGAC":71941, "AAGAG":87510, "AAGTA":55865, "AAGTT":95408, "AAGTC":67581, "AAGTG":89206, "AAGCA":114103, "AAGCT":83089, "AAGCC":137715, "AAGCG":153387, "AAGGA":70132, "AAGGT":94854, "AAGGC":105832, "AAGGG":79983,
"ATAAA":171906, "ATAAT":117022, "ATAAC":121534, "ATAAG":72065, "ATATA":61521, "ATATT":142773, "ATATC":143150, "ATATG":90725, "ATACA":76336, "ATACT":61492, "ATACC":116491, "ATACG":86465, "ATAGA":52126, "ATAGT":55661, "ATAGC":89754, "ATAGG":32150,
"ATTAA":140330, "ATTAT":120106, "ATTAC":118487, "ATTAG":43164, "ATTTA":117794, "ATTTT":219429, "ATTTC":151090, "ATTTG":116711, "ATTCA":137819, "ATTCT":97856, "ATTCC":100584, "ATTCG":98566, "ATTGA":132604, "ATTGT":97817, "ATTGC":163642, "ATTGG":83017,
"ATCAA":159630, "ATCAT":148385, "ATCAC":155310, "ATCAG":192265, "ATCTA":41186, "ATCTT":106194, "ATCTC":96599, "ATCTG":148708, "ATCCA":138261, "ATCCT":101462, "ATCCC":117353, "ATCCG":141798, "ATCGA":125295, "ATCGT":116750, "ATCGC":188675, "ATCGG":134882,
"ATGAA":150091, "ATGAT":146020, "ATGAC":129238, "ATGAG":80876, "ATGTA":58108, "ATGTT":121999, "ATGTC":87563, "ATGTG":84718, "ATGCA":121482, "ATGCT":113450, "ATGCC":159369, "ATGCG":146203, "ATGGA":96999, "ATGGT":127490, "ATGGC":183803, "ATGGG":82048,
"ACAAA":136523, "ACAAT":98831, "ACAAC":131176, "ACAAG":58332, "ACATA":57860, "ACATT":96369, "ACATC":123431, "ACATG":81456, "ACACA":66398, "ACACT":64622, "ACACC":120379, "ACACG":73159, "ACAGA":89611, "ACAGT":79017, "ACAGC":163493, "ACAGG":122160,
"ACTAA":52439, "ACTAT":58692, "ACTAC":58907, "ACTAG":9183, "ACTTA":63353, "ACTTT":108217, "ACTTC":101532, "ACTTG":46382, "ACTCA":81369, "ACTCT":62150, "ACTCC":70395, "ACTCG":47143, "ACTGA":117891, "ACTGT":80903, "ACTGC":139370, "ACTGG":179621,
"ACCAA":111819, "ACCAT":131993, "ACCAC":139041, "ACCAG":190124, "ACCTA":32268, "ACCTT":102139, "ACCTC":64352, "ACCTG":156766, "ACCCA":87116, "ACCCT":63194, "ACCCC":77851, "ACCCG":112988, "ACCGA":128691, "ACCGT":137235, "ACCGC":177817, "ACCGG":159314,
"ACGAA":101080, "ACGAT":113164, "ACGAC":94448, "ACGAG":52561, "ACGTA":75883, "ACGTT":142583, "ACGTC":89519, "ACGTG":77884, "ACGCA":139152, "ACGCT":146929, "ACGCC":189805, "ACGCG":140918, "ACGGA":91529, "ACGGT":131813, "ACGGC":153571, "ACGGG":93139,
"AGAAA":158505, "AGAAT":94773, "AGAAC":108453, "AGAAG":108232, "AGATA":96389, "AGATT":93551, "AGATC":89831, "AGATG":104206, "AGACA":74776, "AGACT":48456, "AGACC":61644, "AGACG":93258, "AGAGA":77248, "AGAGT":58268, "AGAGC":88861, "AGAGG":58433,
"AGTAA":86221, "AGTAT":57730, "AGTAC":68690, "AGTAG":36534, "AGTTA":73586, "AGTTT":115579, "AGTTC":103704, "AGTTG":96784, "AGTCA":76034, "AGTCT":47023, "AGTCC":45157, "AGTCG":70256, "AGTGA":98072, "AGTGT":59974, "AGTGC":100922, "AGTGG":89491,
"AGCAA":156996, "AGCAT":111295, "AGCAC":113248, "AGCAG":174830, "AGCTA":48958, "AGCTT":83825, "AGCTC":78626, "AGCTG":149892, "AGCCA":154115, "AGCCT":95079, "AGCCC":93800, "AGCCG":124852, "AGCGA":142474, "AGCGT":147122, "AGCGC":192884, "AGCGG":161213,
"AGGAA":102467, "AGGAT":99176, "AGGAC":42311, "AGGAG":59282, "AGGTA":74161, "AGGTT":99695, "AGGTC":62170, "AGGTG":100988, "AGGCA":103796, "AGGCT":91003, "AGGCC":76625, "AGGCG":143021, "AGGGA":67869, "AGGGT":59832, "AGGGC":84089, "AGGGG":61858,
"TAAAA":177555, "TAAAT":115242, "TAAAC":122550, "TAAAG":116544, "TAATA":82811, "TAATT":93048, "TAATC":116326, "TAATG":124898, "TAACA":87334, "TAACT":74727, "TAACC":115499, "TAACG":141714, "TAAGA":50738, "TAAGT":61526, "TAAGC":89400, "TAAGG":58905,
"TATAA":63950, "TATAT":61138, "TATAC":53096, "TATAG":35929, "TATTA":83645, "TATTT":135718, "TATTC":125281, "TATTG":123747, "TATCA":130386, "TATCT":99929, "TATCC":118463, "TATCG":144438, "TATGA":81189, "TATGT":57438, "TATGC":99890, "TATGG":90809,
"TACAA":66574, "TACAT":61404, "TACAC":58557, "TACAG":98089, "TACTA":27453, "TACTT":59127, "TACTC":56896, "TACTG":119269, "TACCA":102326, "TACCT":79787, "TACCC":86327, "TACCG":156143, "TACGA":60860, "TACGT":76658, "TACGC":131876, "TACGG":85061,
"TAGAA":47659, "TAGAT":39990, "TAGAC":29701, "TAGAG":32979, "TAGTA":26095, "TAGTT":45136, "TAGTC":37769, "TAGTG":64004, "TAGCA":49061, "TAGCT":48202, "TAGCC":72778, "TAGCG":96801, "TAGGA":20990, "TAGGT":29750, "TAGGC":35341, "TAGGG":23868,
"TTAAA":151834, "TTAAT":140759, "TTAAC":140833, "TTAAG":79613, "TTATA":63879, "TTATT":150758, "TTATC":170533, "TTATG":105889, "TTACA":84349, "TTACT":91163, "TTACC":155261, "TTACG":120267, "TTAGA":33001, "TTAGT":52115, "TTAGC":79768, "TTAGG":29476,
"TTTAA":150580, "TTTAT":173017, "TTTAC":145116, "TTTAG":68307, "TTTTA":179452, "TTTTT":328348, "TTTTC":237473, "TTTTG":205477, "TTTCA":201023, "TTTCT":164187, "TTTCC":162211, "TTTCG":148071, "TTTGA":138885, "TTTGT":136897, "TTTGC":211900, "TTTGG":106476,
"TTCAA":122570, "TTCAT":150648, "TTCAC":151949, "TTCAG":213868, "TTCTA":50985, "TTCTT":145014, "TTCTC":110876, "TTCTG":182486, "TTCCA":142987, "TTCCT":105758, "TTCCC":117247, "TTCCG":147798, "TTCGA":84823, "TTCGT":104175, "TTCGC":165125, "TTCGG":108961,
"TTGAA":123453, "TTGAT":158313, "TTGAC":85546, "TTGAG":102829, "TTGTA":64732, "TTGTT":153219, "TTGTC":102969, "TTGTG":95173, "TTGCA":121755, "TTGCT":161010, "TTGCC":209730, "TTGCG":158847, "TTGGA":39418, "TTGGT":111027, "TTGGC":118699, "TTGGG":66276,
"TCAAA":138813, "TCAAT":132078, "TCAAC":140563, "TCAAG":63256, "TCATA":82469, "TCATT":126382, "TCATC":186435, "TCATG":118489, "TCACA":72610, "TCACT":103244, "TCACC":191828, "TCACG":116344, "TCAGA":123268, "TCAGT":115486, "TCAGC":236730, "TCAGG":179609,
"TCTAA":34154, "TCTAT":52403, "TCTAC":60361, "TCTAG":8520, "TCTTA":52909, "TCTTT":152484, "TCTTC":155078, "TCTTG":59119, "TCTCA":67943, "TCTCT":82581, "TCTCC":90231, "TCTCG":74303, "TCTGA":127025, "TCTGT":90279, "TCTGC":171674, "TCTGG":186221,
"TCCAA":43664, "TCCAT":100636, "TCCAC":104377, "TCCAG":181292, "TCCTA":21386, "TCCTT":73594, "TCCTC":69738, "TCCTG":153647, "TCCCA":72348, "TCCCT":70027, "TCCCC":94323, "TCCCG":105320, "TCCGA":54034, "TCCGT":94779, "TCCGC":142942, "TCCGG":166294,
"TCGAA":84832, "TCGAT":127196, "TCGAC":87570, "TCGAG":62644, "TCGTA":60751, "TCGTT":114864, "TCGTC":112664, "TCGTG":81240, "TCGCA":95859, "TCGCT":144524, "TCGCC":196882, "TCGCG":141008, "TCGGA":51997, "TCGGT":124207, "TCGGC":140517, "TCGGG":86474,
"TGAAA":198161, "TGAAT":137345, "TGAAC":143780, "TGAAG":151790, "TGATA":129612, "TGATT":170007, "TGATC":124673, "TGATG":221885, "TGACA":104820, "TGACT":77834, "TGACC":133810, "TGACG":166882, "TGAGA":66679, "TGAGT":75795, "TGAGC":116536, "TGAGG":76981,
"TGTAA":84422, "TGTAT":73342, "TGTAC":66848, "TGTAG":53794, "TGTTA":87620, "TGTTT":174922, "TGTTC":132318, "TGTTG":159448, "TGTCA":105146, "TGTCT":71485, "TGTCC":65060, "TGTCG":123987, "TGTGA":70554, "TGTGT":63292, "TGTGC":100260, "TGTGG":104352,
"TGCAA":123470, "TGCAT":119680, "TGCAC":101445, "TGCAG":160118, "TGCTA":50616, "TGCTT":115656, "TGCTC":120185, "TGCTG":279973, "TGCCA":198510, "TGCCT":106715, "TGCCC":120651, "TGCCG":247790, "TGCGA":96002, "TGCGT":139816, "TGCGC":220914, "TGCGG":159901,
"TGGAA":138908, "TGGAT":132841, "TGGAC":60516, "TGGAG":84116, "TGGTA":96933, "TGGTT":157608, "TGGTC":114487, "TGGTG":190076, "TGGCA":194655, "TGGCT":156621, "TGGCC":106668, "TGGCG":275665, "TGGGA":71834, "TGGGT":85294, "TGGGC":99138, "TGGGG":103231,
"CAAAA":204667, "CAAAT":119255, "CAAAC":135674, "CAAAG":131821, "CAATA":121943, "CAATT":102201, "CAATC":119449, "CAATG":136192, "CAACA":167563, "CAACT":102066, "CAACC":130788, "CAACG":167900, "CAAGA":59477, "CAAGT":46252, "CAAGC":78199, "CAAGG":68262,
"CATAA":104992, "CATAT":91053, "CATAC":81214, "CATAG":51577, "CATTA":126133, "CATTT":147066, "CATTC":110152, "CATTG":135699, "CATCA":225424, "CATCT":107447, "CATCC":151417, "CATCG":164723, "CATGA":118537, "CATGT":78684, "CATGC":111076, "CATGG":105812,
"CACAA":96788, "CACAT":87219, "CACAC":71868, "CACAG":92956, "CACTA":65823, "CACTT":94334, "CACTC":72283, "CACTG":134355, "CACCA":198415, "CACCT":105022, "CACCC":105125, "CACCG":189814, "CACGA":79963, "CACGT":80332, "CACGC":149407, "CACGG":108086,
"CAGAA":179354, "CAGAT":145730, "CAGAC":140727, "CAGAG":96063, "CAGTA":113670, "CAGTT":166396, "CAGTC":91080, "CAGTG":129526, "CAGCA":278709, "CAGCT":151957, "CAGCC":187855, "CAGCG":287468, "CAGGA":148278, "CAGGT":150228, "CAGGC":196922, "CAGGG":125081,
"CTAAA":68586, "CTAAT":43816, "CTAAC":54915, "CTAAG":29774, "CTATA":36869, "CTATT":67465, "CTATC":83737, "CTATG":53461, "CTACA":54992, "CTACT":39487, "CTACC":73034, "CTACG":75334, "CTAGA":8730, "CTAGT":9055, "CTAGC":15040, "CTAGG":11683,
"CTTAA":82386, "CTTAT":74631, "CTTAC":84103, "CTTAG":30306, "CTTTA":118355, "CTTTT":160446, "CTTTC":144048, "CTTTG":136604, "CTTCA":153870, "CTTCT":116601, "CTTCC":143914, "CTTCG":116767, "CTTGA":64318, "CTTGT":58235, "CTTGC":99695, "CTTGG":33133,
"CTCAA":107009, "CTCAT":85942, "CTCAC":73109, "CTCAG":85271, "CTCTA":33686, "CTCTT":94036, "CTCTC":68828, "CTCTG":103514, "CTCCA":88806, "CTCCT":66923, "CTCCC":63088, "CTCCG":84918, "CTCGA":65329, "CTCGT":56968, "CTCGC":96231, "CTCGG":58782,
"CTGAA":213193, "CTGAT":192860, "CTGAC":169767, "CTGAG":86513, "CTGTA":99252, "CTGTT":161287, "CTGTC":106637, "CTGTG":92132, "CTGCA":161804, "CTGCT":178573, "CTGCC":196814, "CTGCG":182700, "CTGGA":182292, "CTGGT":188745, "CTGGC":295099, "CTGGG":133465,
"CCAAA":106649, "CCAAT":83279, "CCAAC":119288, "CCAAG":33577, "CCATA":90047, "CCATT":138134, "CCATC":164377, "CCATG":107480, "CCACA":109129, "CCACT":92965, "CCACC":150274, "CCACG":112524, "CCAGA":184690, "CCAGT":172761, "CCAGC":293152, "CCAGG":137172,
"CCTAA":29216, "CCTAT":35291, "CCTAC":39323, "CCTAG":12362, "CCTTA":61040, "CCTTT":121041, "CCTTC":115621, "CCTTG":71084, "CCTCA":84279, "CCTCT":60875, "CCTCC":56599, "CCTCG":70400, "CCTGA":187506, "CCTGT":123223, "CCTGC":188208, "CCTGG":141409,
"CCCAA":67069, "CCCAT":80682, "CCCAC":79995, "CCCAG":129199, "CCCTA":25394, "CCCTT":81401, "CCCTC":50987, "CCCTG":126886, "CCCCA":100809, "CCCCT":64378, "CCCCC":76889, "CCCCG":100049, "CCCGA":89620, "CCCGT":93555, "CCCGC":143120, "CCCGG":128933,
"CCGAA":111339, "CCGAT":137740, "CCGAC":105568, "CCGAG":58089, "CCGTA":87155, "CCGTT":157786, "CCGTC":125510, "CCGTG":110953, "CCGCA":167577, "CCGCT":168433, "CCGCC":210078, "CCGCG":143934, "CCGGA":166558, "CCGGT":157646, "CCGGC":160792, "CCGGG":129134,
"CGAAA":143564, "CGAAT":96567, "CGAAC":102420, "CGAAG":113413, "CGATA":141000, "CGATT":132716, "CGATC":125678, "CGATG":164202, "CGACA":125783, "CGACT":73384, "CGACC":96371, "CGACG":119221, "CGAGA":73825, "CGAGT":44920, "CGAGC":83031, "CGAGG":65420,
"CGTAA":119196, "CGTAT":86274, "CGTAC":74092, "CGTAG":75270, "CGTTA":142202, "CGTTT":182335, "CGTTC":126528, "CGTTG":164204, "CGTCA":168185, "CGTCT":95672, "CGTCC":77921, "CGTCG":118993, "CGTGA":114406, "CGTGT":71129, "CGTGC":116872, "CGTGG":112292,
"CGCAA":161907, "CGCAT":146661, "CGCAC":132875, "CGCAG":180018, "CGCTA":96230, "CGCTT":161411, "CGCTC":108522, "CGCTG":289979, "CGCCA":278155, "CGCCT":150000, "CGCCC":141046, "CGCCG":233173, "CGCGA":139785, "CGCGT":139294, "CGCGC":221413, "CGCGG":141643,
"CGGAA":143197, "CGGAT":136229, "CGGAC":83350, "CGGAG":82225, "CGGTA":148327, "CGGTT":152064, "CGGTC":102305, "CGGTG":176618, "CGGCA":240403, "CGGCT":125717, "CGGCC":81216, "CGGCG":225887, "CGGGA":100966, "CGGGT":105188, "CGGGC":135899, "CGGGG":104070,
"GAAAA":229218, "GAAAT":148711, "GAAAC":141179, "GAAAG":138694, "GAATA":125813, "GAATT":100418, "GAATC":96446, "GAATG":109009, "GAACA":133609, "GAACT":104813, "GAACC":97342, "GAACG":124548, "GAAGA":149337, "GAAGT":97528, "GAAGC":150091, "GAAGG":111305,
"GATAA":166385, "GATAT":142425, "GATAC":95186, "GATAG":78834, "GATTA":119683, "GATTT":183896, "GATTC":97244, "GATTG":117329, "GATCA":127846, "GATCT":89070, "GATCC":105004, "GATCG":126583, "GATGA":182085, "GATGT":120534, "GATGC":170532, "GATGG":160814,
"GACAA":106785, "GACAT":86272, "GACAC":72854, "GACAG":105676, "GACTA":39547, "GACTT":68884, "GACTC":45636, "GACTG":94121, "GACCA":112671, "GACCT":64978, "GACCC":50632, "GACCG":103910, "GACGA":109623, "GACGT":88453, "GACGC":131990, "GACGG":124919,
"GAGAA":105225, "GAGAT":94159, "GAGAC":36131, "GAGAG":67779, "GAGTA":54050, "GAGTT":83627, "GAGTC":41720, "GAGTG":67103, "GAGCA":115803, "GAGCT":77567, "GAGCC":69150, "GAGCG":108687, "GAGGA":64822, "GAGGT":62232, "GAGGC":76547, "GAGGG":47186,
"GTAAA":141958, "GTAAT":116483, "GTAAC":102407, "GTAAG":80529, "GTATA":52430, "GTATT":108350, "GTATC":95280, "GTATG":80442, "GTACA":69853, "GTACT":70360, "GTACC":79587, "GTACG":73959, "GTAGA":56922, "GTAGT":56280, "GTAGC":82373, "GTAGG":37277,
"GTTAA":141620, "GTTAT":123646, "GTTAC":102692, "GTTAG":53526, "GTTTA":122718, "GTTTT":246080, "GTTTC":141882, "GTTTG":137853, "GTTCA":147752, "GTTCT":109675, "GTTCC":105528, "GTTCG":101588, "GTTGA":135461, "GTTGT":123627, "GTTGC":175420, "GTTGG":114761,
"GTCAA":87335, "GTCAT":129200, "GTCAC":103148, "GTCAG":166272, "GTCTA":29913, "GTCTT":74694, "GTCTC":37704, "GTCTG":140180, "GTCCA":60421, "GTCCT":42730, "GTCCC":43321, "GTCCG":85125, "GTCGA":87687, "GTCGT":91894, "GTCGC":128172, "GTCGG":102769,
"GTGAA":147117, "GTGAT":150618, "GTGAC":99587, "GTGAG":67640, "GTGTA":57121, "GTGTT":119263, "GTGTC":68219, "GTGTG":67838, "GTGCA":101087, "GTGCT":113049, "GTGCC":107788, "GTGCG":131952, "GTGGA":98885, "GTGGT":132807, "GTGGC":136555, "GTGGG":81021,
"GCAAA":211635, "GCAAT":164997, "GCAAC":176703, "GCAAG":98070, "GCATA":98287, "GCATT":157772, "GCATC":172537, "GCATG":107638, "GCACA":101538, "GCACT":104639, "GCACC":134597, "GCACG":117214, "GCAGA":166070, "GCAGT":132989, "GCAGC":212350, "GCAGG":184682,
"GCTAA":81405, "GCTAT":93299, "GCTAC":82487, "GCTAG":14507, "GCTTA":93502, "GCTTT":176899, "GCTTC":155319, "GCTTG":79612, "GCTCA":117294, "GCTCT":91909, "GCTCC":83853, "GCTCG":86092, "GCTGA":231182, "GCTGT":161154, "GCTGC":218647, "GCTGG":295512,
"GCCAA":121351, "GCCAT":185544, "GCCAC":140473, "GCCAG":289712, "GCCTA":36924, "GCCTT":110297, "GCCTC":85676, "GCCTG":201797, "GCCCA":96465, "GCCCT":84966, "GCCCC":91244, "GCCCG":138101, "GCCGA":141519, "GCCGT":154946, "GCCGC":226062, "GCCGG":162553,
"GCGAA":160760, "GCGAT":186519, "GCGAC":127497, "GCGAG":95403, "GCGTA":131445, "GCGTT":200941, "GCGTC":132155, "GCGTG":146211, "GCGCA":220326, "GCGCT":195057, "GCGCC":205253, "GCGCG":219203, "GCGGA":136122, "GCGGT":165771, "GCGGC":218546, "GCGGG":141171,
"GGAAA":159031, "GGAAT":100577, "GGAAC":104189, "GGAAG":136331, "GGATA":114563, "GGATT":120214, "GGATC":105420, "GGATG":144417, "GGACA":66420, "GGACT":47393, "GGACC":39167, "GGACG":76903, "GGAGA":85827, "GGAGT":66114, "GGAGC":81424, "GGAGG":51382,
"GGTAA":150143, "GGTAT":111064, "GGTAC":78769, "GGTAG":66889, "GGTTA":114931, "GGTTT":171638, "GGTTC":95790, "GGTTG":127532, "GGTCA":134075, "GGTCT":63435, "GGTCC":39658, "GGTCG":96751, "GGTGA":180913, "GGTGT":112006, "GGTGC":129858, "GGTGG":143335,
"GGCAA":210675, "GGCAT":156532, "GGCAC":109113, "GGCAG":183588, "GGCTA":75497, "GGCTT":143388, "GGCTC":69719, "GGCTG":184635, "GGCCA":105924, "GGCCT":79982, "GGCCC":53189, "GGCCG":81217, "GGCGA":193082, "GGCGT":182257, "GGCGC":203062, "GGCGG":202468,
"GGGAA":116849, "GGGAT":114020, "GGGAC":43300, "GGGAG":60335, "GGGTA":85569, "GGGTT":98224, "GGGTC":52473, "GGGTG":98257, "GGGCA":120757, "GGGCT":96561, "GGGCC":54319, "GGGCG":138672, "GGGGA":93999, "GGGGT":81898, "GGGGC":89901, "GGGGG":85032
},
"overrepresented_sequences": {
}
},
"command": "fastp --detect_adapter_for_pe -i SRR7738178_rmphix_R1.fastq.gz -I SRR7738178_rmphix_R2.fastq.gz -o fastp/SRR7738178_fastp_R1.fastq.gz -O fastp/SRR7738178_fastp_R2.fastq.gz -h fastp/SRR7738178_fastp.html -j fastp/SRR7738178_fastp.json "
}
No per run file
-
- amrfinderplus
- bbduk
- blastn
- blobtools_*
- core_genome_evaluation
- circulocov
- datasets_*
- drprg
- elgato
- emmtyper
- fastani
- fastp
- fastqc
- heatcluster
- iqtree2
- kaptive
- kleborate
- kraken2
- mash_*
- mashtree
- mlst
- multiqc
- mykrobe
- panaroo
- pbptyper
- phytreeviz
- plasmidfinder
- prokka
- quast
- seqsero2
- serotypefinder
- shigatyper
- snp_dists
- spades