Bump STAR modules #193
GitHub Actions / JUnit Test Report
failed
Dec 18, 2024 in 0s
4 tests run, 2 passed, 0 skipped, 2 failed.
Annotations
Check failure on line 1 in Test Subworkflow ALIGN_STAR
github-actions / JUnit Test Report
Test Subworkflow ALIGN_STAR.star - no igenomes
Assertion failed:
1 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.11.0-edge
Launching `/home/runner/work/rnaseq/rnaseq/.nf-test-2be7ff0e2973c5db734bd832f73cd98f.nf` [hopeful_franklin] DSL2 - revision: a4e6d11464
Downloading plugin [email protected]
Downloading plugin [email protected]
[9a/22d3ac] Submitted process > STAR_GENOMEGENERATE (genome.fasta)
[80/6a25b8] Submitted process > ALIGN_STAR:STAR_ALIGN (test)
[81/3751c2] Submitted process > ALIGN_STAR:BAM_SORT_STATS_SAMTOOLS:SAMTOOLS_SORT (test)
[c3/5f86e6] Submitted process > ALIGN_STAR:BAM_SORT_STATS_SAMTOOLS:SAMTOOLS_INDEX (test)
[8b/90e3a1] Submitted process > ALIGN_STAR:BAM_SORT_STATS_SAMTOOLS:BAM_STATS_SAMTOOLS:SAMTOOLS_IDXSTATS (test)
[76/b6920c] Submitted process > ALIGN_STAR:BAM_SORT_STATS_SAMTOOLS:BAM_STATS_SAMTOOLS:SAMTOOLS_FLAGSTAT (test)
[6a/4dffe9] Submitted process > ALIGN_STAR:BAM_SORT_STATS_SAMTOOLS:BAM_STATS_SAMTOOLS:SAMTOOLS_STATS (test)
Nextflow stderr:
Check failure on line 1 in Test Subworkflow ALIGN_STAR
github-actions / JUnit Test Report
Test Subworkflow ALIGN_STAR.star - no igenomes - stub
Assertion failed:
1 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.11.0-edge
Launching `/home/runner/work/rnaseq/rnaseq/.nf-test-e6f40b40a8b79e7710f02593d6906ead.nf` [drunk_babbage] DSL2 - revision: a4e6d11464
[11/c167ca] Submitted process > STAR_GENOMEGENERATE (genome.fasta)
[a4/ad2226] Submitted process > ALIGN_STAR:STAR_ALIGN (test)
[3e/99046c] Submitted process > ALIGN_STAR:BAM_SORT_STATS_SAMTOOLS:SAMTOOLS_SORT (test)
[88/8892d8] Submitted process > ALIGN_STAR:BAM_SORT_STATS_SAMTOOLS:SAMTOOLS_INDEX (test)
[98/ab22fe] Submitted process > ALIGN_STAR:BAM_SORT_STATS_SAMTOOLS:BAM_STATS_SAMTOOLS:SAMTOOLS_IDXSTATS (test)
[f3/ce0cbf] Submitted process > ALIGN_STAR:BAM_SORT_STATS_SAMTOOLS:BAM_STATS_SAMTOOLS:SAMTOOLS_FLAGSTAT (test)
[41/06f661] Submitted process > ALIGN_STAR:BAM_SORT_STATS_SAMTOOLS:BAM_STATS_SAMTOOLS:SAMTOOLS_STATS (test)
Nextflow stderr:
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