Bump STAR modules #193
GitHub Actions / JUnit Test Report
failed
Dec 18, 2024 in 0s
4 tests run, 2 passed, 0 skipped, 2 failed.
Annotations
Check failure on line 1 in Test Subworkflow ALIGN_STAR
github-actions / JUnit Test Report
Test Subworkflow ALIGN_STAR.star - no igenomes
Assertion failed:
1 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.04.2
Launching `/home/runner/work/rnaseq/rnaseq/.nf-test-2be7ff0e2973c5db734bd832f73cd98f.nf` [exotic_heisenberg] DSL2 - revision: a4e6d11464
Downloading plugin [email protected]
Downloading plugin [email protected]
[ca/583755] Submitted process > STAR_GENOMEGENERATE (genome.fasta)
[91/2e8289] Submitted process > ALIGN_STAR:STAR_ALIGN (test)
[c4/86ca76] Submitted process > ALIGN_STAR:BAM_SORT_STATS_SAMTOOLS:SAMTOOLS_SORT (test)
[34/04f10e] Submitted process > ALIGN_STAR:BAM_SORT_STATS_SAMTOOLS:SAMTOOLS_INDEX (test)
[ed/5a7c69] Submitted process > ALIGN_STAR:BAM_SORT_STATS_SAMTOOLS:BAM_STATS_SAMTOOLS:SAMTOOLS_IDXSTATS (test)
[aa/ea7ea3] Submitted process > ALIGN_STAR:BAM_SORT_STATS_SAMTOOLS:BAM_STATS_SAMTOOLS:SAMTOOLS_FLAGSTAT (test)
[49/51b1c8] Submitted process > ALIGN_STAR:BAM_SORT_STATS_SAMTOOLS:BAM_STATS_SAMTOOLS:SAMTOOLS_STATS (test)
Nextflow stderr:
Nextflow 24.10.3 is available - Please consider updating your version to it
Check failure on line 1 in Test Subworkflow ALIGN_STAR
github-actions / JUnit Test Report
Test Subworkflow ALIGN_STAR.star - no igenomes - stub
Assertion failed:
1 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.04.2
Launching `/home/runner/work/rnaseq/rnaseq/.nf-test-e6f40b40a8b79e7710f02593d6906ead.nf` [jovial_celsius] DSL2 - revision: a4e6d11464
[99/9f462a] Submitted process > STAR_GENOMEGENERATE (genome.fasta)
[ab/bed4c0] Submitted process > ALIGN_STAR:STAR_ALIGN (test)
[19/9654fd] Submitted process > ALIGN_STAR:BAM_SORT_STATS_SAMTOOLS:SAMTOOLS_SORT (test)
[7f/803256] Submitted process > ALIGN_STAR:BAM_SORT_STATS_SAMTOOLS:SAMTOOLS_INDEX (test)
[f0/645e29] Submitted process > ALIGN_STAR:BAM_SORT_STATS_SAMTOOLS:BAM_STATS_SAMTOOLS:SAMTOOLS_FLAGSTAT (test)
[fe/69c556] Submitted process > ALIGN_STAR:BAM_SORT_STATS_SAMTOOLS:BAM_STATS_SAMTOOLS:SAMTOOLS_IDXSTATS (test)
[2b/977e23] Submitted process > ALIGN_STAR:BAM_SORT_STATS_SAMTOOLS:BAM_STATS_SAMTOOLS:SAMTOOLS_STATS (test)
Nextflow stderr:
Nextflow 24.10.3 is available - Please consider updating your version to it
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