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fixes
compile and e.coli #542: Commit 072b12a pushed by Dmitry-Antipov
June 10, 2024 17:16 6m 21s scaff2
June 10, 2024 17:16 6m 21s
capture snakemake exit code and pass it up, improve error messages
compile and e.coli #541: Commit 5e1cbd7 pushed by skoren
June 7, 2024 18:24 6m 26s master
June 7, 2024 18:24 6m 26s
wip
compile and e.coli #540: Commit 2c51e81 pushed by Dmitry-Antipov
June 7, 2024 18:06 6m 34s scaff2
June 7, 2024 18:06 6m 34s
fix for non-str arguments #258
compile and e.coli #539: Commit 886ed33 pushed by skoren
June 7, 2024 15:08 6m 50s master
June 7, 2024 15:08 6m 50s
fixes
compile and e.coli #538: Commit 691f381 pushed by Dmitry-Antipov
June 5, 2024 15:47 8m 24s scaff2
June 5, 2024 15:47 8m 24s
Adding reference based check
compile and e.coli #537: Commit 59594ec pushed by Dmitry-Antipov
June 5, 2024 14:46 6m 16s scaff2
June 5, 2024 14:46 6m 16s
add utility script to build
compile and e.coli #536: Commit 3547b18 pushed by skoren
June 4, 2024 16:01 6m 23s master
June 4, 2024 16:01 6m 23s
wip
compile and e.coli #535: Commit b78990e pushed by Dmitry-Antipov
June 4, 2024 14:47 5m 56s scaff2
June 4, 2024 14:47 5m 56s
paths fix
compile and e.coli #534: Commit 4814f4a pushed by Dmitry-Antipov
June 4, 2024 13:16 6m 37s scaff2
June 4, 2024 13:16 6m 37s
param fix
compile and e.coli #533: Commit 911f1f7 pushed by Dmitry-Antipov
June 4, 2024 13:13 6m 27s scaff2
June 4, 2024 13:13 6m 27s
more fixes
compile and e.coli #532: Commit a794eef pushed by Dmitry-Antipov
June 4, 2024 13:11 6m 24s scaff2
June 4, 2024 13:11 6m 24s
fx
compile and e.coli #531: Commit 8fab5d8 pushed by Dmitry-Antipov
June 4, 2024 12:45 46m 43s scaff2
June 4, 2024 12:45 46m 43s
snakemake for ref-based scaff
compile and e.coli #530: Commit 3ff037e pushed by Dmitry-Antipov
June 4, 2024 12:41 6m 29s scaff2
June 4, 2024 12:41 6m 29s
crash fx
compile and e.coli #529: Commit 1ee11a6 pushed by Dmitry-Antipov
June 4, 2024 11:07 6m 19s scaff2
June 4, 2024 11:07 6m 19s
wip for ref-based
compile and e.coli #528: Commit e4d8fbe pushed by Dmitry-Antipov
June 3, 2024 22:24 6m 22s scaff2
June 3, 2024 22:24 6m 22s
cleaning up rdna functions, updating connectivity
compile and e.coli #527: Commit ed1c63d pushed by Dmitry-Antipov
June 3, 2024 16:57 6m 26s scaff2
June 3, 2024 16:57 6m 26s
Handle recursive make in submodules; version number in main.mk; one-o…
compile and e.coli #526: Commit 9f46346 pushed by brianwalenz
June 3, 2024 16:33 7m 1s master
June 3, 2024 16:33 7m 1s
snakemake fix
compile and e.coli #525: Commit 9302efa pushed by Dmitry-Antipov
June 3, 2024 13:36 7m 25s scaff2
June 3, 2024 13:36 7m 25s
fx
compile and e.coli #524: Commit b789ca8 pushed by Dmitry-Antipov
May 31, 2024 17:12 6m 6s scaff2
May 31, 2024 17:12 6m 6s
fx
compile and e.coli #523: Commit 5e43416 pushed by Dmitry-Antipov
May 31, 2024 16:59 13m 45s scaff2
May 31, 2024 16:59 13m 45s
mashmap into pipeline
compile and e.coli #522: Commit 2aba44e pushed by Dmitry-Antipov
May 31, 2024 16:56 6m 13s scaff2
May 31, 2024 16:56 6m 13s
add pipefail so bwa/minimap2 errors are detected
compile and e.coli #521: Commit b56c53c pushed by skoren
May 30, 2024 18:45 6m 5s master
May 30, 2024 18:45 6m 5s
Connectivity improved
compile and e.coli #520: Commit 038394a pushed by Dmitry-Antipov
May 30, 2024 17:35 6m 24s scaff2
May 30, 2024 17:35 6m 24s
workable pipeline
compile and e.coli #519: Commit d9e3919 pushed by Dmitry-Antipov
May 30, 2024 10:24 6m 30s scaff2
May 30, 2024 10:24 6m 30s
add the -I flag to winnowmap for mappings. This both improves asm and…
compile and e.coli #518: Commit 9da92f2 pushed by skoren
May 28, 2024 18:02 6m 26s master
May 28, 2024 18:02 6m 26s