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enforce distance from contig ends when recruiting reads for winnowmap… compile and e.coli #492: Commit 3881415 pushed by skoren
April 26, 2024 21:11 6m 27s master
master
April 26, 2024 21:11 6m 27s
increase slightly max node that can become homozygous after assignment compile and e.coli #491: Commit 3bf36a1 pushed by skoren
April 25, 2024 14:16 9m 38s master
master
April 25, 2024 14:16 9m 38s
skip gap filling paths with incorrect clips compile and e.coli #490: Commit 9514bb5 pushed by maickrau
April 23, 2024 05:27 6m 3s master
master
April 23, 2024 05:27 6m 3s
Allow bam/cram files for ONT and Hi-C. compile and e.coli #489: Commit c41a544 pushed by brianwalenz
April 22, 2024 17:19 6m 3s master
master
April 22, 2024 17:19 6m 3s
rdna-scaff option removed; rdna scaffolding switched on by default, c… compile and e.coli #488: Commit b0e5a38 pushed by Dmitry-Antipov
April 19, 2024 19:02 6m 21s master
master
April 19, 2024 19:02 6m 21s
Actualizing stage-run options compile and e.coli #487: Commit 28f3e3e pushed by Dmitry-Antipov
April 18, 2024 22:42 6m 5s master
master
April 18, 2024 22:42 6m 5s
additional debug compile and e.coli #486: Commit cf80b6a pushed by Dmitry-Antipov
April 18, 2024 20:22 6m 3s master
master
April 18, 2024 20:22 6m 3s
update rukki tag compile and e.coli #485: Commit faab036 pushed by skoren
April 18, 2024 16:00 6m 35s master
master
April 18, 2024 16:00 6m 35s
fix typo compile and e.coli #484: Commit 920030d pushed by skoren
April 10, 2024 19:23 6m 24s master
master
April 10, 2024 19:23 6m 24s
allow custom repeat for rDNA scaffolding compile and e.coli #483: Commit 2bb6fc8 pushed by skoren
April 10, 2024 19:17 6m 8s master
master
April 10, 2024 19:17 6m 8s
Update max homozygous node size in rukki compile and e.coli #482: Commit a836d7a pushed by skoren
April 10, 2024 17:10 7m 4s master
master
April 10, 2024 17:10 7m 4s
do not crrash for large pieces with no reads assigned, itis more norm… compile and e.coli #481: Commit fcea86a pushed by Dmitry-Antipov
April 10, 2024 02:08 19m 49s v2_for_paper
v2_for_paper
April 10, 2024 02:08 19m 49s
updated logic for initial partitioning, still not perfect compile and e.coli #480: Commit a377e8e pushed by Dmitry-Antipov
April 9, 2024 22:26 6m 27s master
master
April 9, 2024 22:26 6m 27s
updated logic for initial partitioning, still not perfect compile and e.coli #479: Commit 7408465 pushed by Dmitry-Antipov
April 9, 2024 22:18 6m 27s hic_updates
hic_updates
April 9, 2024 22:18 6m 27s
more accurate checks for low-link hic scaffolding compile and e.coli #478: Commit 39ff906 pushed by Dmitry-Antipov
April 6, 2024 21:48 6m 13s master
master
April 6, 2024 21:48 6m 13s
Check for invalid meryl DBs on start #240 compile and e.coli #477: Commit f2b81a7 pushed by skoren
April 5, 2024 14:31 6m 38s master
master
April 5, 2024 14:31 6m 38s
Replace non-POSIX '==' with '=' in shell tests. Issue #244. compile and e.coli #476: Commit e3a0566 pushed by brianwalenz
April 3, 2024 07:46 6m 44s master
master
April 3, 2024 07:46 6m 44s
do not crrash for large pieces with no reads assigned, itis more norm… compile and e.coli #475: Commit b050ef4 pushed by Dmitry-Antipov
March 25, 2024 22:13 6m 19s master
master
March 25, 2024 22:13 6m 19s
Should not crash when no long arm detected compile and e.coli #474: Commit 68af043 pushed by Dmitry-Antipov
March 25, 2024 19:40 7m 8s master
master
March 25, 2024 19:40 7m 8s
detect missing ont_subset.id earlier compile and e.coli #470: Commit 9ee717e pushed by skoren
March 18, 2024 17:43 6m 27s master
master
March 18, 2024 17:43 6m 27s
Fix for empty pieces in scfmap, now gluing small and intentionally cr… compile and e.coli #469: Commit b47102c pushed by Dmitry-Antipov
March 15, 2024 19:43 6m 24s master
master
March 15, 2024 19:43 6m 24s
more fixes for int jobids compile and e.coli #468: Commit 3857190 pushed by Dmitry-Antipov
March 13, 2024 16:39 2m 19s v1_fxd
v1_fxd
March 13, 2024 16:39 2m 19s
fight with python some more compile and e.coli #467: Commit 8f3d550 pushed by skoren
March 12, 2024 01:33 7m 2s master
master
March 12, 2024 01:33 7m 2s
Fix handling of pre-corrected reads, always operate in HPC space compile and e.coli #466: Commit fc890f7 pushed by skoren
March 12, 2024 01:21 4m 43s master
master
March 12, 2024 01:21 4m 43s
status check rate increased to improve wall time for large task swarms compile and e.coli #465: Commit bbd88cb pushed by Dmitry-Antipov
March 11, 2024 15:20 5m 8s master
master
March 11, 2024 15:20 5m 8s