param fix

marbl · Jun 4, 2024 · 911f1f7 · 911f1f7
1 parent a794eef
commit 911f1f7
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/src/Snakefiles/8-hicPipeline.sm b/src/Snakefiles/8-hicPipeline.sm
@@ -181,7 +181,7 @@ echo "---Preparing rukki paths fasta"
 {PYTHON} {VERKKO}/scripts/get_paths_fasta.py ../{input.rukki_tsv} ../{input.unitigs_hpc} ../{input.graph_hpc} paths.hpc.fasta
 
 echo "---Running MashMap"
-{params.MASHMAP} -r {params.ref}  -q paths.hpc.fasta -t {threads} --pi 95.0 -s 10000 -o ../{output.path_mashmap}
+{params.MASHMAP} -r {params.ref}  -q paths.hpc.fasta -t {threads}  -f none --pi 95.0 -s 10000 -o ../{output.path_mashmap}
 EOF
 
 chmod +x ./prepare_ref_mashmap.sh