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Update -I flag to minimap2 to handle larger genomes as well compile and e.coli #517: Commit d98961e pushed by skoren
May 26, 2024 16:17 6m 13s master
master
May 26, 2024 16:17 6m 13s
multimapper processing added, will not be used for now compile and e.coli #516: Commit 4056df5 pushed by Dmitry-Antipov
May 25, 2024 19:40 6m 6s scaff2
scaff2
May 25, 2024 19:40 6m 6s
fix circularization with multiple sequences in file compile and e.coli #515: Commit ec2376e pushed by skoren
May 24, 2024 00:54 6m 39s master
master
May 24, 2024 00:54 6m 39s
multiparsing compile and e.coli #514: Commit 9128c84 pushed by Dmitry-Antipov
May 23, 2024 03:20 20m 2s scaff2
scaff2
May 23, 2024 03:20 20m 2s
crash fixes compile and e.coli #513: Commit cbf6da4 pushed by Dmitry-Antipov
May 20, 2024 19:35 6m 40s scaff2
scaff2
May 20, 2024 19:35 6m 40s
permissions compile and e.coli #512: Commit a01a3cc pushed by Dmitry-Antipov
May 17, 2024 22:32 6m 37s scaff2
scaff2
May 17, 2024 22:32 6m 37s
wip compile and e.coli #511: Commit 32f3dec pushed by Dmitry-Antipov
May 15, 2024 04:17 6m 56s scaff2
scaff2
May 15, 2024 04:17 6m 56s
ensure we fail when conversion of hic pairs fails, don't track mis-so… compile and e.coli #510: Commit 932e872 pushed by skoren
May 13, 2024 15:59 6m 34s master
master
May 13, 2024 15:59 6m 34s
finally some scaffolds compile and e.coli #509: Commit b7e8a82 pushed by Dmitry-Antipov
May 12, 2024 02:03 6m 37s scaff2
scaff2
May 12, 2024 02:03 6m 37s
cleanup compile and e.coli #508: Commit f72fec2 pushed by Dmitry-Antipov
May 11, 2024 04:30 6m 40s scaff2
scaff2
May 11, 2024 04:30 6m 40s
Reasonable HiC Path connection compile and e.coli #507: Commit 3f6c68c pushed by Dmitry-Antipov
May 11, 2024 04:01 5m 59s scaff2
scaff2
May 11, 2024 04:01 5m 59s
wip compile and e.coli #506: Commit 7eb05e3 pushed by Dmitry-Antipov
May 9, 2024 01:56 6m 6s scaff2
scaff2
May 9, 2024 01:56 6m 6s
wip compile and e.coli #505: Commit 6874e72 pushed by Dmitry-Antipov
May 9, 2024 01:46 6m 7s scaff2
scaff2
May 9, 2024 01:46 6m 7s
matchGraph refactored and improved to make diploid component-check po… compile and e.coli #504: Commit 44dbc9a pushed by Dmitry-Antipov
May 9, 2024 00:49 8m 45s scaff2
scaff2
May 9, 2024 00:49 8m 45s
use minimap2 instead of winnowmap (better stats) for porec, add porec… compile and e.coli #503: Commit 700aa4a pushed by skoren
May 7, 2024 20:59 9m 8s master
master
May 7, 2024 20:59 9m 8s
Merge pull request #251 from marbl/tangle_fix compile and e.coli #502: Commit bd8f556 pushed by skoren
May 6, 2024 20:53 6m 36s master
master
May 6, 2024 20:53 6m 36s
Merge pull request #250 from marbl/porec compile and e.coli #501: Commit d4284bb pushed by skoren
May 6, 2024 20:51 6m 52s master
master
May 6, 2024 20:51 6m 52s
tangle removal heuristics quick fix compile and e.coli #500: Pull request #251 opened by Dmitry-Antipov
May 6, 2024 18:07 7m 12s tangle_fix
tangle_fix
May 6, 2024 18:07 7m 12s
tangle fix compile and e.coli #499: Commit 61c6d95 pushed by Dmitry-Antipov
May 6, 2024 18:04 6m 23s tangle_fix
tangle_fix
May 6, 2024 18:04 6m 23s
wip compile and e.coli #498: Commit da96dc3 pushed by Dmitry-Antipov
May 5, 2024 20:21 6m 32s scaff2
scaff2
May 5, 2024 20:21 6m 32s
Initial porec support compile and e.coli #497: Pull request #250 opened by skoren
May 3, 2024 14:13 6m 37s porec
porec
May 3, 2024 14:13 6m 37s
tweak mapping parameters for faster mapping and improved filtering compile and e.coli #496: Commit 7809005 pushed by skoren
May 3, 2024 13:40 6m 50s porec
porec
May 3, 2024 13:40 6m 50s
clean up spaces at ends of lines compile and e.coli #495: Commit 7c8a96b pushed by skoren
May 2, 2024 14:01 6m 16s porec
porec
May 2, 2024 14:01 6m 16s
Directly passing sort order to merge. Without it some read pairs coul… compile and e.coli #494: Commit f1b43f1 pushed by Dmitry-Antipov
May 1, 2024 19:16 6m 20s master
master
May 1, 2024 19:16 6m 20s
removed condition on the identity. mashmaps --pi is enough and that o… compile and e.coli #493: Commit 8780981 pushed by Dmitry-Antipov
April 30, 2024 01:52 6m 11s master
master
April 30, 2024 01:52 6m 11s