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Issues list

Prediction outputs differ for different batch sizes [BUG] bug Something isn't working wontfix This will not be worked on
#158 opened Jun 21, 2024 by melisande-c
@melisande-c
PathIterable dataset with a single file and no validation will fail[BUG] bug Something isn't working wontfix This will not be worked on
#160 opened Jun 21, 2024 by jdeschamps
2
Adapt TTA from training configuration bug Something isn't working feature New feature or request
#167 opened Jun 24, 2024 by jdeschamps v0.2.0
1
GitHub Action Codecov v0.8.0 failing for Mac OS bug Something isn't working external issue External issues to be monitored occasionally
#201 opened Aug 7, 2024 by melisande-c
2
In Transform objects, should target be folded into new additional_arrays kwargs? refactoring Streamline and improve source code
#247 opened Sep 13, 2024 by melisande-c
Passing dataloader num_workers param causes bad results w/o shuffle=True bug Something isn't working external issue External issues to be monitored occasionally
#258 opened Oct 24, 2024 by melisande-c
@melisande-c
3
Reproduce exact CARE architecture feature New feature or request
#264 opened Nov 7, 2024 by jdeschamps v0.2.0
@veegalinova
Deconvolution using careamics example Examples of using CAREamics
#268 opened Nov 12, 2024 by OReyesMatte
1
Why the difference in patch extraction approaches (random vs. sequential) for iterable and in-memory datasets? example Examples of using CAREamics question Further information is requested
#282 opened Nov 26, 2024 by carshadi
3
Review tests feature New feature or request
#289 opened Dec 6, 2024 by jdeschamps v0.2.0
2
General framework for dataset, format-agnostic and compatible with NGFF feature New feature or request refactoring Streamline and improve source code
#292 opened Dec 6, 2024 by jdeschamps v0.1.0
@CatEek @veegalinova @melisande-c
Next-Gen Dataset: Exclude background patches during training feature New feature or request
#293 opened Dec 6, 2024 by jdeschamps v0.1.0
Improved training tracking: compute metrics, save predictions feature New feature or request
#294 opened Dec 6, 2024 by jdeschamps v0.2.0
Compute receptive field and tiling automatically feature New feature or request
#295 opened Dec 6, 2024 by jdeschamps
Does 3D prediction fail if the Z dimension is too small (not a power of 2, less than 8)? question Further information is requested
#296 opened Dec 6, 2024 by jdeschamps v0.2.0
2
Should we save train/val patches for reproducibility? question Further information is requested
#297 opened Dec 6, 2024 by jdeschamps
Autocorrelation function compatible with stacks feature New feature or request
#298 opened Dec 6, 2024 by jdeschamps v0.2.0
Noise2Void validation convenience functions feature New feature or request
#299 opened Dec 6, 2024 by jdeschamps v0.2.0
Automated benchmarks for all algorithms feature New feature or request
#300 opened Dec 6, 2024 by jdeschamps
5 tasks
v0.1.0
@diyasrivas
Hyperparameter grid-search feature New feature or request
#302 opened Dec 6, 2024 by jdeschamps
Percentile normalization feature New feature or request
#303 opened Dec 6, 2024 by jdeschamps v0.1.0
GAP sine normalization via input layers feature New feature or request
#304 opened Dec 6, 2024 by jdeschamps
Show users available checkpoints feature New feature or request
#305 opened Dec 6, 2024 by jdeschamps
Add careamics.plot module feature New feature or request
#306 opened Dec 6, 2024 by jdeschamps v0.1.0
1
ZeroCost Colab notebook interoperability Making CAREamics compatible with another software
#308 opened Dec 6, 2024 by jdeschamps v0.2.0
1
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