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Noise2Void validation convenience functions #299

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jdeschamps opened this issue Dec 6, 2024 · 0 comments
Open

Noise2Void validation convenience functions #299

jdeschamps opened this issue Dec 6, 2024 · 0 comments
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@jdeschamps
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Problem

Since N2V is self-supervised, it is not clear to many users how to properly validate the results. In the docs, we highlight the importance to examine the following:

  • autocorrelation to inspect structured noise in the data
  • residuals after training to see whether any spatial information has been removed, spatial information being not 0-mean as opposed to Poisson or readout noise.

Currently, the autocorrelation is not compatible with stacks (#298), and there is no convenience function to compute the residuals or examine their statistics.

Finally, residuals could be logged during training (idea raised by @conradkun).

Potential solution

Linked issues

#294: log prediction (potentially residuals) during training
#298: extend autocorrelation function to stacks

@jdeschamps jdeschamps added the feature New feature or request label Dec 6, 2024
@jdeschamps jdeschamps modified the milestone: v0.1.0 Dec 6, 2024
@jdeschamps jdeschamps added this to the v0.2.0 milestone Dec 17, 2024
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