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Achievement: Pull SharkAchievement: Arctic Code Vault Contributor

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Achievement: Pull SharkAchievement: Arctic Code Vault Contributor

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@ratschlab @pygridtools @ETH-NEXUS @cancervariants

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  • bioconda-recipes Public

    Forked from bioconda/bioconda-recipes

    Conda recipes for the bioconda channel.

    Shell MIT License Updated Jan 9, 2025

  • TranscriptSkimmer Public

    TranscriptSkimmer: Generate high confidence transcript structures from RNA-Seq data

    C++ 1 Updated Dec 27, 2021

  • vcf2maf Public

    Forked from mskcc/vcf2maf

    Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms

    Perl Other Updated Jul 31, 2019

  • GFFtools-GX Public

    gfftools - Galaxy toolshed repository

    Python 14 17 BSD 3-Clause "New" or "Revised" License Updated Sep 13, 2017

  • tdu_htscreen Public

    Python Updated Jun 26, 2017

  • genomeutils Public

    Genome sequence and annotation processing utils

    Python 3 2 BSD 3-Clause "New" or "Revised" License Updated Aug 26, 2016

  • promoter_eval Public

    promoter evaluation procedures

    Python Updated Dec 11, 2015

  • pyjobrunner Public

    An extension of pythongrid program

    Python 1 Updated Dec 3, 2015

  • brca_pilot Public

    allele specific gene expression analysis pipeline

    Python 1 BSD 3-Clause "New" or "Revised" License Updated Nov 20, 2015

  • gfftools Public

    GFF/GTF file processing utilities

    Python Updated Nov 6, 2015

  • gx-utils Public

    Galaxy Utils used for oqtans public instance

    Python Updated Oct 12, 2015

  • oqtans Public

    Online Quantitative Transcriptome Analysis

    C++ 3 1 BSD 3-Clause "New" or "Revised" License Updated Sep 29, 2015

  • brca-website Public

    Forked from BD2KGenomics/brca-website-deprecated
    JavaScript Apache License 2.0 Updated Sep 14, 2015

  • pcr_primers Public

    primer design using primer3

    Python 1 2 Updated Jun 22, 2015

  • hgvs Public

    Forked from counsyl/hgvs

    HGVS variant name parsing and generation

    Python MIT License Updated Jun 15, 2015

  • tool_dep_packages Public

    galaxy tool dependency packages

    Updated May 8, 2015

  • deepseq Public

    Deep sequencing data analysis programs

    C++ 1 Updated Apr 11, 2015

  • shogun Public

    Forked from shogun-toolbox/shogun

    The Shogun Machine Learning Toolbox (Source Code)

    C++ GNU General Public License v3.0 Updated Jan 10, 2015

  • tutorials_2014 Public

    tri institutional tutorials_2014 materials

    TeX Updated Nov 14, 2014

  • timelinebrowser Public

    Visualization app

    JavaScript Updated Nov 11, 2014

  • d3-timeline Public

    Forked from jiahuang/d3-timeline

    Simple JS timeline plugin for d3

    JavaScript Updated Oct 6, 2014

  • deseq-hts Public

    A Galaxy wrapper for DESeq program

    Shell 1 Updated Sep 3, 2014

  • NuPoP-GX Public

    Nucleosome Positioning Prediction

    Fortran Updated Jul 24, 2014

  • KEngine-GX Public

    Galaxy tools for clinical science

    Python Updated May 29, 2014

  • TaskManager Public

    Job submitter programs

    Python Updated Mar 20, 2014

  • SInBaD-GX Public

    Exploring functional variant discovery in non-coding regions

    Python Updated Mar 20, 2014

  • pythongrid Public

    Forked from pygridtools/pythongrid

    High-level python wapper for the Sun Grid Engine (SGE) using DRMAA and ZMQ

    Python Updated Feb 20, 2014

  • converters Public

    different file format converters

    Python 6 8 Updated Sep 26, 2013

  • HTSHelpers Public

    Forked from mlist/HTSHelpers

    HTS helper methods for normalizing and plotting in R

    R GNU General Public License v3.0 Updated Aug 21, 2013

  • trsk Public

    Forked from JonasBehr/trsk

    Transcript skimmer: generate high confidence transcript structures from RNA-Seq data

    C++ Updated Oct 10, 2012