adding config to auto-insert ontology header tags for legacy ontologi…

…es. See OBOFoundry#204 for details
pporrasebi · Jan 22, 2016 · a3159b5 · a3159b5
1 parent 6a75c54
commit a3159b5
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Showing 12 changed files with 12 additions and 1 deletion.
diff --git a/ontology/bila.md b/ontology/bila.md
@@ -15,6 +15,7 @@ title: Bilateria anatomy
 build:
   source_url: http://4dx.embl.de/4DXpress_4d/edocs/bilateria_mrca.obo
   method: obo2owl
+  insert_ontology_id: true
 is_obsolete: true
 replaced_by: uberon
 ---

diff --git a/ontology/bto.md b/ontology/bto.md
@@ -20,6 +20,7 @@ license:
 title: BRENDA tissue / enzyme source
 build:
   source_url: http://www.brenda-enzymes.info/ontology/tissue/tree/update/update_files/BrendaTissueOBO
+  insert_ontology_id: true
   method: obo2owl
 ---
 

diff --git a/ontology/ddpheno.md b/ontology/ddpheno.md
@@ -16,6 +16,7 @@ taxon:
 title: Dictyostelium discoideum phenotype
 build:
   source_url: https://raw.githubusercontent.com/dictyBase/migration-data/master/ontologies/dicty_phenotypes.obo
+  insert_ontology_id: true
   method: obo2owl
 ---
 

diff --git a/ontology/emap.md b/ontology/emap.md
@@ -17,6 +17,7 @@ title: Mouse gross anatomy and development, timed
 build:
   notes: new url soon
   source_url: ftp://ftp.hgu.mrc.ac.uk/pub/MouseAtlas/Anatomy/EMAP_combined.obo
+  insert_ontology_id: true
   method: obo2owl
 used_by:
  - url: https://www.biosharing.org/biodbcore-000659

diff --git a/ontology/fao.md b/ontology/fao.md
@@ -16,6 +16,7 @@ taxon:
 title: Fungal gross anatomy
 build:
   source_url: http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/anatomy/gross_anatomy/microbial_gross_anatomy/fungi/fungal_anatomy.obo
+  insert_ontology_id: true
   method: obo2owl
 ---
 

diff --git a/ontology/fbsp.md b/ontology/fbsp.md
@@ -16,7 +16,7 @@ title: Fly taxonomy
 build:
   source_url: http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/taxonomy/fly_taxonomy.obo
   method: obo2owl
-
+  insert_ontology_id: true
 is_obsolete: true
 ---
 

diff --git a/ontology/fma.md b/ontology/fma.md
@@ -20,6 +20,7 @@ taxon:
 title: Foundational Model of Anatomy (subset)
 build:
   source_url: http://svn.code.sf.net/p/obo/svn/fma-conversion/trunk/fma2_obo.obo
+  insert_ontology_id: true
   method: obo2owl
 tracker: https://sourceforge.net/p/obo/foundational-model-of-anatomy-fma-requests/
 ---

diff --git a/ontology/mfo.md b/ontology/mfo.md
@@ -15,6 +15,7 @@ title: Medaka fish anatomy and development
 build:
   source_url: http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/anatomy/gross_anatomy/animal_gross_anatomy/fish/medaka_ontology.obo
   method: obo2owl
+  insert_ontology_id: true
 ---
 
 A structured controlled vocabulary of the anatomy and development of the Japanese medaka fish, <i>Oryzias latipes</i>.
diff --git a/ontology/mod.md b/ontology/mod.md
@@ -12,6 +12,7 @@ products:
 title: Protein modification
 build:
   source_url: https://raw.githubusercontent.com/MICommunity/psidev/master/psi/mod/data/PSI-MOD.obo
+  insert_ontology_id: true
   method: obo2owl
 ---
 

diff --git a/ontology/mpath.md b/ontology/mpath.md
@@ -19,6 +19,7 @@ license:
   label: CC-BY
 build:
   source_url: https://raw.githubusercontent.com/PaulNSchofield/mpath/master/mpath.obo
+  insert_ontology_id: true
   method: obo2owl
 ---
 

diff --git a/ontology/rex.md b/ontology/rex.md
@@ -10,6 +10,7 @@ products:
 title: Physico-chemical process
 build:
   source_url: http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/physicochemical/rex.obo
+  insert_ontology_id: true
   method: obo2owl
 ---
 

diff --git a/ontology/spd.md b/ontology/spd.md
@@ -16,6 +16,7 @@ title: Spider Ontology
 build:
   source_url: http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/anatomy/gross_anatomy/animal_gross_anatomy/spider/spider_comparative_biology.obo
   method: obo2owl
+  insert_ontology_id: true
 tracker: http://sourceforge.net/tracker/?group_id=76834&atid=977401
 ---