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| Original file line number | Diff line number | Diff line change |
|---|---|---|
|
|
@@ -389,16 +389,19 @@ ontologies: | |
| url: 'http://creativecommons.org/licenses/by/3.0/'} | ||
| ontology_purl: http://purl.obolibrary.org/obo/ceph.owl | ||
| products: | ||
| - {id: ceph.owl, ontology_purl: 'http://purl.obolibrary.org/obo/ceph.owl'} | ||
| - {id: ceph.owl, ontology_purl: 'http://purl.obolibrary.org/obo/ceph.owl', title: main | ||
| version} | ||
| - {id: ceph.obo, ontology_purl: 'http://purl.obolibrary.org/obo/ceph.obo', title: oboformat | ||
| edition} | ||
| taxon: {id: 'NCBITaxon:6605', label: Cephalopod} | ||
| title: Cephalopod Ontology | ||
| tracker: https://github.com/obophenotype/cephalopod-ontology/issues | ||
| - build: {method: owl2obo, source_url: 'http://semanticchemistry.googlecode.com/svn/trunk/ontology/cheminf.owl'} | ||
| contact: {email: [email protected], label: Janna Hastings} | ||
| contact: {email: [email protected], label: Egon Willighagen} | ||
| description: Includes terms for the descriptors commonly used in cheminformatics | ||
| software applications and the algorithms which generate them. | ||
| domain: biochemistry | ||
| homepage: http://code.google.com/p/semanticchemistry/ | ||
| homepage: https://github.com/egonw/semanticchemistry | ||
| id: cheminf | ||
| layout: ontology_detail | ||
| ontology_purl: http://purl.obolibrary.org/obo/cheminf.owl | ||
|
|
@@ -767,19 +770,19 @@ ontologies: | |
| - {id: epo.owl, ontology_purl: 'http://purl.obolibrary.org/obo/epo.owl'} | ||
| title: Epidemiology Ontology | ||
| - build: {method: owl2obo, source_url: 'http://purl.obolibrary.org/obo/ero.owl'} | ||
| contact: {email: [email protected], label: Carlo Torniai} | ||
| contact: {email: [email protected], label: Tenille Johnson} | ||
| description: An ontology of research resources such as instruments. protocols, reagents, | ||
| animal models and biospecimens. | ||
| documentation: http://code.google.com/p/eagle-i/wiki/Documentation | ||
| documentation: https://open.med.harvard.edu/wiki/display/eaglei/Ontology | ||
| domain: resources | ||
| homepage: http://code.google.com/p/eagle-i/ | ||
| homepage: https://open.med.harvard.edu/wiki/display/eaglei/Ontology | ||
| id: ero | ||
| layout: ontology_detail | ||
| ontology_purl: http://purl.obolibrary.org/obo/ero.owl | ||
| products: | ||
| - {id: ero.owl, ontology_purl: 'http://purl.obolibrary.org/obo/ero.owl'} | ||
| title: eagle-i resource ontology | ||
| tracker: http://code.google.com/p/eagle-i/issues/list | ||
| tracker: null | ||
| - build: {method: obo2owl, source_url: 'http://ctdbase.org/reports/CTD_exposure_ontology.obo'} | ||
| description: Vocabularies for describing exposure data to inform understanding of | ||
| environmental health. | ||
|
|
@@ -1150,15 +1153,15 @@ ontologies: | |
| title: Mathematical modeling ontology | ||
| tracker: http://sourceforge.net/p/mamo-ontology/tickets/ | ||
| - build: {method: owl2obo, source_url: 'http://purl.obolibrary.org/obo/mf.owl'} | ||
| contact: {email: hastings@ebi.ac.uk, label: Janna Hastings} | ||
| homepage: https://code.google.com/p/mental-functioning-ontology/ | ||
| contact: {email: janna.hastings@gmail.com, label: Janna Hastings} | ||
| homepage: https://github.com/jannahastings/mental-functioning-ontology | ||
| id: mf | ||
| layout: ontology_detail | ||
| ontology_purl: http://purl.obolibrary.org/obo/mf.owl | ||
| products: | ||
| - {id: mf.owl, ontology_purl: 'http://purl.obolibrary.org/obo/mf.owl'} | ||
| title: Mental Functioning Ontology | ||
| tracker: https://code.google.com/p/mental-functioning-ontology/issues/list | ||
| tracker: https://github.com/jannahastings/mental-functioning-ontology/issues | ||
| - contact: {email: [email protected], label: Robert Druzinsky} | ||
| dependencies: | ||
| - {id: uberon} | ||
|
|
@@ -1191,30 +1194,30 @@ ontologies: | |
| taxon: {id: 'NCBITaxon:8089', label: Oryzias} | ||
| title: Medaka fish anatomy and development | ||
| - build: {method: owl2obo, source_url: 'http://purl.obolibrary.org/obo/mfoem.owl'} | ||
| contact: {email: hastings@ebi.ac.uk, label: Janna Hastings} | ||
| contact: {email: janna.hastings@gmail.com, label: Janna Hastings} | ||
| description: An ontology of affective phenomena such as emotions, moods, appraisals | ||
| and subjective feelings. | ||
| domain: health | ||
| homepage: https://code.google.com/p/emotion-ontology/ | ||
| homepage: https://github.com/jannahastings/emotion-ontology | ||
| id: mfoem | ||
| layout: ontology_detail | ||
| ontology_purl: http://purl.obolibrary.org/obo/mfoem.owl | ||
| products: | ||
| - {id: mfoem.owl, ontology_purl: 'http://purl.obolibrary.org/obo/mfoem.owl'} | ||
| title: Emotion Ontology | ||
| tracker: https://code.google.com/p/emotion-ontology/issues/list | ||
| - contact: {email: hastings@ebi.ac.uk, label: Janna Hastings} | ||
| tracker: https://github.com/jannahastings/emotion-ontology/issues | ||
| - contact: {email: janna.hastings@gmail.com, label: Janna Hastings} | ||
| description: An ontology to describe and classify mental diseases | ||
| domain: health | ||
| homepage: http://mental-functioning-ontology.googlecode.com | ||
| homepage: https://github.com/jannahastings/mental-functioning-ontology | ||
| id: mfomd | ||
| layout: ontology_detail | ||
| ontology_purl: http://purl.obolibrary.org/obo/mfomd.owl | ||
| products: | ||
| - {id: mfomd.owl, ontology_purl: 'http://purl.obolibrary.org/obo/mfomd.owl', title: Mental | ||
| Disease Ontology} | ||
| title: MFO Mental Disease Ontology | ||
| - build: {method: obo2owl, source_url: 'https://raw.githubusercontent.com/MICommunity/psidev/master/psi/mi/rel25/data/psi-mi25.obo'} | ||
| - build: {insert_ontology_id: true, method: obo2owl, source_url: 'https://raw.githubusercontent.com/MICommunity/psidev/master/psi/mi/rel25/data/psi-mi25.obo'} | ||
| contact: {email: [email protected], label: Henning Hermjakob} | ||
| description: A structured controlled vocabulary for the annotation of experiments | ||
| concerned with protein-protein interactions. | ||
|
|
@@ -1365,7 +1368,8 @@ ontologies: | |
| title: Mouse pathology | ||
| tracker: https://github.com/PaulNSchofield/mpath/issues | ||
| - contact: {email: [email protected], label: Bjoern Peters} | ||
| description: Represents MHC restrictions | ||
| description: An ontology for Major Histocompatibility Complex (MHC) restriction | ||
| in experiments | ||
| homepage: https://github.com/IEDB/MRO | ||
| id: mro | ||
| layout: ontology_detail | ||
|
|
@@ -1374,7 +1378,7 @@ ontologies: | |
| ontology_purl: http://purl.obolibrary.org/obo/mro.owl | ||
| products: | ||
| - {id: mro.owl, ontology_purl: 'http://purl.obolibrary.org/obo/mro.owl'} | ||
| title: MHC restriction ontology | ||
| title: MHC Restriction Ontology | ||
| tracker: https://github.com/IEDB/MRO/issues | ||
| - build: {method: obo2owl, source_url: 'https://raw.githubusercontent.com/MICommunity/psidev/master/psi/psi-ms/mzML/controlledVocabulary/psi-ms.obo'} | ||
| contact: {email: [email protected], label: Gerhard Mayer} | ||
|
|
||
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
|
|
@@ -769,7 +769,13 @@ | |
| "products": [ | ||
| { | ||
| "id": "ceph.owl", | ||
| "ontology_purl": "http://purl.obolibrary.org/obo/ceph.owl" | ||
| "ontology_purl": "http://purl.obolibrary.org/obo/ceph.owl", | ||
| "title": "main version" | ||
| }, | ||
| { | ||
| "id": "ceph.obo", | ||
| "ontology_purl": "http://purl.obolibrary.org/obo/ceph.obo", | ||
| "title": "oboformat edition" | ||
| } | ||
| ], | ||
| "taxon": { | ||
|
|
@@ -785,12 +791,12 @@ | |
| "source_url": "http://semanticchemistry.googlecode.com/svn/trunk/ontology/cheminf.owl" | ||
| }, | ||
| "contact": { | ||
| "email": "[email protected]", | ||
| "label": "Janna Hastings" | ||
| "email": "[email protected]", | ||
| "label": "Egon Willighagen" | ||
| }, | ||
| "description": "Includes terms for the descriptors commonly used in cheminformatics software applications and the algorithms which generate them.", | ||
| "domain": "biochemistry", | ||
| "homepage": "http://code.google.com/p/semanticchemistry/", | ||
| "homepage": "https://github.com/egonw/semanticchemistry", | ||
| "id": "cheminf", | ||
| "layout": "ontology_detail", | ||
| "ontology_purl": "http://purl.obolibrary.org/obo/cheminf.owl", | ||
|
|
@@ -1562,13 +1568,13 @@ | |
| "source_url": "http://purl.obolibrary.org/obo/ero.owl" | ||
| }, | ||
| "contact": { | ||
| "email": "[email protected]", | ||
| "label": "Carlo Torniai" | ||
| "email": "[email protected]", | ||
| "label": "Tenille Johnson" | ||
| }, | ||
| "description": "An ontology of research resources such as instruments. protocols, reagents, animal models and biospecimens.", | ||
| "documentation": "http://code.google.com/p/eagle-i/wiki/Documentation", | ||
| "documentation": "https://open.med.harvard.edu/wiki/display/eaglei/Ontology", | ||
| "domain": "resources", | ||
| "homepage": "http://code.google.com/p/eagle-i/", | ||
| "homepage": "https://open.med.harvard.edu/wiki/display/eaglei/Ontology", | ||
| "id": "ero", | ||
| "layout": "ontology_detail", | ||
| "ontology_purl": "http://purl.obolibrary.org/obo/ero.owl", | ||
|
|
@@ -1579,7 +1585,7 @@ | |
| } | ||
| ], | ||
| "title": "eagle-i resource ontology", | ||
| "tracker": "http://code.google.com/p/eagle-i/issues/list" | ||
| "tracker": null | ||
| }, | ||
| { | ||
| "build": { | ||
|
|
@@ -2372,10 +2378,10 @@ | |
| "source_url": "http://purl.obolibrary.org/obo/mf.owl" | ||
| }, | ||
| "contact": { | ||
| "email": "hastings@ebi.ac.uk", | ||
| "email": "janna.hastings@gmail.com", | ||
| "label": "Janna Hastings" | ||
| }, | ||
| "homepage": "https://code.google.com/p/mental-functioning-ontology/", | ||
| "homepage": "https://github.com/jannahastings/mental-functioning-ontology", | ||
| "id": "mf", | ||
| "layout": "ontology_detail", | ||
| "ontology_purl": "http://purl.obolibrary.org/obo/mf.owl", | ||
|
|
@@ -2386,7 +2392,7 @@ | |
| } | ||
| ], | ||
| "title": "Mental Functioning Ontology", | ||
| "tracker": "https://code.google.com/p/mental-functioning-ontology/issues/list" | ||
| "tracker": "https://github.com/jannahastings/mental-functioning-ontology/issues" | ||
| }, | ||
| { | ||
| "contact": { | ||
|
|
@@ -2455,12 +2461,12 @@ | |
| "source_url": "http://purl.obolibrary.org/obo/mfoem.owl" | ||
| }, | ||
| "contact": { | ||
| "email": "hastings@ebi.ac.uk", | ||
| "email": "janna.hastings@gmail.com", | ||
| "label": "Janna Hastings" | ||
| }, | ||
| "description": "An ontology of affective phenomena such as emotions, moods, appraisals and subjective feelings.", | ||
| "domain": "health", | ||
| "homepage": "https://code.google.com/p/emotion-ontology/", | ||
| "homepage": "https://github.com/jannahastings/emotion-ontology", | ||
| "id": "mfoem", | ||
| "layout": "ontology_detail", | ||
| "ontology_purl": "http://purl.obolibrary.org/obo/mfoem.owl", | ||
|
|
@@ -2471,16 +2477,16 @@ | |
| } | ||
| ], | ||
| "title": "Emotion Ontology", | ||
| "tracker": "https://code.google.com/p/emotion-ontology/issues/list" | ||
| "tracker": "https://github.com/jannahastings/emotion-ontology/issues" | ||
| }, | ||
| { | ||
| "contact": { | ||
| "email": "hastings@ebi.ac.uk", | ||
| "email": "janna.hastings@gmail.com", | ||
| "label": "Janna Hastings" | ||
| }, | ||
| "description": "An ontology to describe and classify mental diseases", | ||
| "domain": "health", | ||
| "homepage": "http://mental-functioning-ontology.googlecode.com", | ||
| "homepage": "https://github.com/jannahastings/mental-functioning-ontology", | ||
| "id": "mfomd", | ||
| "layout": "ontology_detail", | ||
| "ontology_purl": "http://purl.obolibrary.org/obo/mfomd.owl", | ||
|
|
@@ -2495,6 +2501,7 @@ | |
| }, | ||
| { | ||
| "build": { | ||
| "insert_ontology_id": true, | ||
| "method": "obo2owl", | ||
| "source_url": "https://raw.githubusercontent.com/MICommunity/psidev/master/psi/mi/rel25/data/psi-mi25.obo" | ||
| }, | ||
|
|
@@ -2810,7 +2817,7 @@ | |
| "email": "[email protected]", | ||
| "label": "Bjoern Peters" | ||
| }, | ||
| "description": "Represents MHC restrictions", | ||
| "description": "An ontology for Major Histocompatibility Complex (MHC) restriction in experiments", | ||
| "homepage": "https://github.com/IEDB/MRO", | ||
| "id": "mro", | ||
| "layout": "ontology_detail", | ||
|
|
@@ -2826,7 +2833,7 @@ | |
| "ontology_purl": "http://purl.obolibrary.org/obo/mro.owl" | ||
| } | ||
| ], | ||
| "title": "MHC restriction ontology", | ||
| "title": "MHC Restriction Ontology", | ||
| "tracker": "https://github.com/IEDB/MRO/issues" | ||
| }, | ||
| { | ||
|
|
||
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