Repositories list

• vero-research

  Public
  HTML

  •0•0•0•0•Updated Jan 22, 2025Jan 22, 2025

• Bioinformatics_tools

  Public
  Repository for VERO bioinformatics tools

  R

  •

  MIT License

  •0•0•0•0•Updated Jan 13, 2025Jan 13, 2025

• ICASA_liver_abscess_manuscript_code

  Public
  R

  •0•0•0•0•Updated Jan 7, 2025Jan 7, 2025

• VARIANTplusplus

  Public
  Nextflow

  •

  MIT License

  •0•0•0•0•Updated Dec 10, 2024Dec 10, 2024

• FDA_liver_abscess_trial

  Public
  R

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Dec 2, 2024Dec 2, 2024

• Full_GI_manuscript_code

  Public
  R

  •

  MIT License

  •0•0•0•0•Updated Dec 2, 2024Dec 2, 2024

• AMRplusplus

  Public
  AMR++ is a bioinformatic pipeline meant to aid in the analysis of raw sequencing reads to characterize the profile of antimicrobial resistance genes, or resistome.

  Nextflow

  •

  GNU General Public License v3.0

  •12•31•17•2•Updated Nov 26, 2024Nov 26, 2024

• Manuscript-Mh_TE_validation

  Public
  Repository for results and R code used in the manuscript...

  0•0•0•0•Updated Jan 11, 2024Jan 11, 2024

• TE_inputDNA_manuscript_code

  Public
  0•0•0•0•Updated Jul 12, 2023Jul 12, 2023

• PetRisk_manuscript_code

  Public
  HTML

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  MIT License

  •0•0•0•0•Updated Jun 28, 2023Jun 28, 2023

• Student_workspace

  Public
  0•0•0•0•Updated May 26, 2023May 26, 2023

• meglab

  Public
  HTML

  •0•0•0•0•Updated Jan 14, 2023Jan 14, 2023

• AMRplusplus_bioinformatic_workshop

  Public
  R

  •2•6•1•0•Updated Jan 2, 2023Jan 2, 2023

• megares-db

  Public
  Java

  •0•1•0•0•Updated Nov 19, 2022Nov 19, 2022

• megares

  Public
  TypeScript

  •0•0•1•0•Updated Nov 19, 2022Nov 19, 2022

• Bioinformatics_resources

  Public
  R

  •

  MIT License

  •1•2•0•0•Updated Sep 28, 2022Sep 28, 2022

• Antimicrobial-drug-use-effect-on-microbiome-and-resistome-of-beef-feedlots

  Public
  This repository contains all of the code required to replicate the analysis in the manuscript "METAGENOMIC INVESTIGATION OF THE EFFECTS OF ANTIMICROBIAL DRUG USE PRACTICES ON THE MICROBIOME AND RESISTOME OF BEEF FEEDLOT CATTLE"

  R

  •

  MIT License

  •0•2•0•0•Updated Oct 25, 2021Oct 25, 2021

• Guelph_calf_diarrhea_metagenomic_analyses

  Public
  R

  •

  MIT License

  •0•0•0•0•Updated Jan 23, 2020Jan 23, 2020