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    12 repositories

    • bases2fastq-nf

      Public
      Bases2fastq-nf is a bioinformatics pipeline used to demultiplex the raw data produced by the Element AVITI™ System using the Bases2Fastq Software.
      demultiplexingnextflow-pipelineelementbiosciences
      Nextflow
      •
      Apache License 2.0
      •1•0•0•0•Updated Jan 8, 2025Jan 8, 2025

    • configs

      Public
      custom elembio specific nextflow configs
      Nextflow
      •
      Apache License 2.0
      •0•0•0•0•Updated Dec 13, 2024Dec 13, 2024

    • cytoprofiling

      Public
      Python and R libraries for processing cytoprofiling datasets from Element Biosciences
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Dec 9, 2024Dec 9, 2024

    • sentieon-cli-nf

      Public
      Elembio Catalyst nextflow wrapper for sentieon-cli
      Groovy
      •
      BSD 2-Clause "Simplified" License
      •0•0•0•0•Updated Dec 7, 2024Dec 7, 2024

    • parabricks-nextflow

      Public
      Accelerated genomics workflows in NextFlow
      Roff
      •
      Apache License 2.0
      •9•0•0•0•Updated Dec 7, 2024Dec 7, 2024

    • cells2stats-nf

      Public
      Cells2stats-nf is a bioinformatics pipeline used to assign reads and generate cell statistics from the raw data produced by the Element AVITI24™ System using the Cells2Stats Software.
      Nextflow
      •0•0•0•0•Updated Dec 2, 2024Dec 2, 2024

    • loop-core

      Public
      Rust
      •
      BSD 3-Clause "New" or "Revised" License
      •2•0•0•1•Updated May 16, 2024May 16, 2024

    • bases2fastq-dx

      Public
      Bases2fastq-dx is A DNAnexus applet for building a DNAnexus bioinformatics workflow used to demultiplex the raw data produced by the Element AVITI™ System using the Bases2Fastq Software.
      dnanexus-workflowselementbiosciences
      Shell
      •
      Apache License 2.0
      •0•0•0•0•Updated Mar 26, 2024Mar 26, 2024

    • MultiQC

      Public
      Aggregate results from bioinformatics analyses across many samples into a single report.
      Python
      •
      GNU General Public License v3.0
      •606•0•0•0•Updated Aug 28, 2023Aug 28, 2023

    • MultiQC_TestData

      Public
      Test data for MultiQC. See https://github.com/ewels/MultiQC
      HTML
      •
      MIT License
      •146•0•0•0•Updated Aug 17, 2023Aug 17, 2023

    • AvidityManuscript2023

      Public
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•4•0•0•Updated Mar 8, 2023Mar 8, 2023

    • .github

      Public
      Element Biosciences
      0•0•0•0•Updated Dec 8, 2022Dec 8, 2022