variant-interpreter settings support fixed #236

src/conf/opencga-clinical-analysis-browser.settings.js

@@ -0,0 +1,48 @@
+const opencgaClinicalAnalysisBrowserSettings = {
+    menu: {
+        // merge criterium: it uses this `filters` array as filter for internal one. Each object is merged with spread operator
+        filters: [
+            {
+                id: "id"
+            },
+            {
+                id: "family"
+            },
+            {
+                id: "proband"
+            },
+            {
+                id: "sample"
+            },
+            {
+                id: "status"
+            },
+            {
+                id: "priority"
+            },
+            {
+                id: "type"
+            },
+            {
+                id: "date"
+            }
+        ],
+        // merge criterium: full outer join-like. it adds objects presents in internal array only and in external array only. In case of same id, the external value overwrite the internal.
+        examples: [
+        ]
+    },
+    table: {
+        // merge criterium: spread operator
+        toolbar: {
+            showColumns: true,
+            showExport: false,
+            showDownload: true
+            // columns list for the dropdown will be added in grid components based on settings.table.columns
+        },
+        // merge criterium: uses this array as filter for internal 1D/2D array. It handles row/col span
+        // TODO NOTE this refers to clinical-analysis-grid (same list in review-cases.settings)
+        columns: ["caseId", "probandId", "familyId", "disorderId", "interpretation", "action"]
+    },
+    // merge criterium: uses this array as filter for internal 1D array.
+    detail: ["clinical-analysis-view", "json-view"]
+};

src/conf/opencga-clinical-review-cases.settings.js

@@ -24,15 +24,15 @@ const OpencgaClinicalReviewCasesSettings = {
                 id: "assignee"
             }
         ],
-        // merge criterium: full outer join like. it adds objects presents in internal array only and in external array only. In case of objects with same id, the external values overwrite the internal.
+        // merge criterium: full outer join-like. it adds objects presents in internal array only and in external array only. In case of same id, the external value overwrite the internal.
         examples: [
-            {
+            /* {
                 id: "Intellectual disability2",
                 active: false,
                 query: {
                     disorder: "Intellectual disability"
                 }
-            }
+            }*/
         ]
     },
     table: {
@@ -42,9 +42,10 @@ const OpencgaClinicalReviewCasesSettings = {
             showCreate: true,
             showExport: false,
             showDownload: true,
-            // columns list will be added in grid components based on settings.table.columns
+            // columns list for the dropdown will be added in grid components based on settings.table.columns
         },
         // merge criterium: uses this array as filter for internal 1D/2D array. It handles row/col span
+        // TODO NOTE this refers to clinical-analysis-grid (same list in clinical-analysis-browser.settings)
         columns: ["caseId", "probandId", "familyId", "disorderId", "interpretation", "action"]
     },
     // TODO details tabs are not configurable at the moment

src/conf/opencga-variant-browser.settings.js

@@ -36,7 +36,7 @@ const OpencgaVariantBrowserSettings = {
             showColumns: true,
             showExport: false,
             showDownload: true
-            // columns list will be added in grid components based on settings.table.columns
+            // columns list for the dropdown will be added in grid components based on settings.table.columns
         },
         // merge criterium: uses this array as filter for internal 1D/2D array. It handles row/col span
         columns: ["id", "gene", "type", "consequenceType", "deleteriousness", "conservation", "samples", "cohorts", "popfreq", "clinicalInfo"]

src/conf/variant-interpreter-browser-cancer.settings.js

@@ -9,7 +9,7 @@ const variantInterpreterBrowserCancerSettings = {
             showColumns: true,
             showExport: false,
             showDownload: true
-            // columns list will be added in grid components based on settings.table.columns
+            // columns list for the dropdown will be added in grid components based on settings.table.columns
         },
         // merge criterium: uses this array as filter for internal 1D/2D array. It handles row/col span
         // columns: ["id"]

src/conf/variant-interpreter-browser-rd.settings.js

@@ -61,7 +61,7 @@ const variantInterpreterBrowserRdSettings = {
             showColumns: true,
             showExport: false,
             showDownload: true
-            // columns list will be added in grid components based on settings.table.columns
+            // columns list for the dropdown will be added in grid components based on settings.table.columns
         },
         // merge criterium: uses this array as filter for internal 1D/2D array. It handles row/col span
         columns: ["id", "gene", "type", "consequenceType", "zygosity", "evidences", "VCF_Data", "frequencies", "clinicalInfo", "interpretation", "review", "actions"]

src/conf/variant-interpreter-qc-overview.settings.js

@@ -1,4 +1,4 @@
 const variantInterpreterQcOverviewSettings = {
-    // for both cancer and family tabs
+    // for both cancer and family cases
     tabs: ["Summary", /* "VariantStats", "SamtoolsPlots", /* "Alignment",*/ "InferredSex", "MendelianErrors", "Relatedness", /* "AlignmentStats",*/ "GenomicContext"]
 }