Catalog settings.js completed #236

src/conf/opencga-cohort-browser.settings.js

@@ -0,0 +1,39 @@
+const opencgaCohortBrowserSettings = {
+    /* menu: {
+        // merge criterium: it uses this `filters` array as filter for internal one. Each object is merged with spread operator
+        filters: [
+            {
+                id: "id"
+            },
+            {
+                id: "samples"
+            },
+            {
+                id: "type"
+            },
+            {
+                id: "date"
+            },
+            {
+                id: "annotations"
+            }
+        ],
+        // merge criterium: full outer join-like. it adds objects presents in internal array only and in external array only. In case of same id, the external value overwrite the internal.
+        examples: [
+        ]
+    },
+    table: {
+        // merge criterium: spread operator
+        toolbar: {
+            showColumns: true,
+            showExport: false,
+            showDownload: true
+            // columns list for the dropdown will be added in grid components based on settings.table.columns
+        },
+        // merge criterium: uses this array as filter for internal 1D/2D array. It handles row/col span
+        columns: ["id", "numSamples", "creationDate", "type"]
+    },
+    // merge criterium: uses this array as filter for internal 1D array.
+    detail: ["cohort-view", "sample-view", "json-view"]
+    */
+};

src/conf/opencga-family-browser.settings.js

@@ -0,0 +1,41 @@
+const opencgaFamilyBrowserSettings = {
+    /* menu: {
+        // merge criterium: it uses this `filters` array as filter for internal one. Each object is merged with spread operator
+        filters: [
+            {
+                id: "id"
+            },
+            {
+                id: "members"
+            },
+            {
+                id: "phenotypes"
+            },
+            {
+                id: "disorders"
+            },
+            {
+                id: "date"
+            },
+            {
+                id: "annotations"
+            }
+        ],
+        // merge criterium: full outer join-like. it adds objects presents in internal array only and in external array only. In case of same id, the external value overwrite the internal.
+        examples: [
+        ]
+    },
+    table: {
+        // merge criterium: spread operator
+        toolbar: {
+            showColumns: true,
+            showExport: false,
+            showDownload: true
+            // columns list for the dropdown will be added in grid components based on settings.table.columns
+        },
+        // merge criterium: uses this array as filter for internal 1D/2D array. It handles row/col span
+        columns: ["id", "members", "disorders", "phenotypes", "caseId", "customAnnotation", "creationDate"]
+    },
+    // merge criterium: uses this array as filter for internal 1D array.
+    detail: ["family-view", "family-relatedness", "json-view"]*/
+};

src/conf/opencga-file-browser.settings.js

@@ -0,0 +1,47 @@
+const opencgaFileBrowserSettings = {
+    /* menu: {
+        // merge criterium: it uses this `filters` array as filter for internal one. Each object is merged with spread operator
+        filters: [
+            {
+                "id": "name"
+            },
+            {
+                "id": "sampleIds"
+            },
+            {
+                "id": "directory"
+            },
+            {
+                "id": "format"
+            },
+            {
+                "id": "bioformat"
+            },
+            {
+                "id": "internal.index.status.name"
+            },
+            {
+                "id": "date"
+            },
+            {
+                "id": "annotations"
+            }
+        ],
+        // merge criterium: full outer join-like. it adds objects presents in internal array only and in external array only. In case of same id, the external value overwrite the internal.
+        examples: []
+    },
+    table: {
+        // merge criterium: spread operator
+        toolbar: {
+            showColumns: true,
+            showExport: false,
+            showDownload: true
+            // columns list for the dropdown will be added in grid components based on settings.table.columns
+        },
+        // merge criterium: uses this array as filter for internal 1D/2D array. It handles row/col span
+        columns: ["name", "directory", "size", "format", "bioformat", "index", "creationDate", "actions"]
+    },
+    // merge criterium: uses this array as filter for internal 1D array.
+    detail: ["file-view", "file-preview", "json-view"]
+    */
+};

src/conf/opencga-individual-browser.settings.js

@@ -0,0 +1,59 @@
+const opencgaIndividualBrowserSettings = {
+    /*menu: {
+        // merge criterium: it uses this `filters` array as filter for internal one. Each object is merged with spread operator
+        filters: [
+            {
+                id: "id"
+            },
+            {
+                id: "samples"
+            },
+            {
+                id: "father"
+            },
+            {
+                id: "mother"
+            },
+            {
+                id: "phenotypes"
+            },
+            {
+                id: "disorders"
+            },
+            {
+                id: "sex"
+            },
+            {
+                id: "karyotypicSex"
+            },
+            {
+                id: "ethnicity"
+            },
+            {
+                id: "lifeStatus"
+            },
+            {
+                id: "date"
+            },
+            {
+                id: "annotations"
+            }
+        ],
+        // merge criterium: full outer join-like. it adds objects presents in internal array only and in external array only. In case of same id, the external value overwrite the internal.
+        examples: []
+    },
+    table: {
+        // merge criterium: spread operator
+        toolbar: {
+            showColumns: true,
+            showExport: false,
+            showDownload: true
+            // columns list for the dropdown will be added in grid components based on settings.table.columns
+        },
+        // merge criterium: uses this array as filter for internal 1D/2D array. It handles row/col span
+        columns: ["id", "samples", "father", "mother", "disorders", "phenotypes", "caseId", "sex", "lifeStatus", "dateOfBirth", "creationDate"]
+    },
+    // merge criterium: uses this array as filter for internal 1D array.
+    detail: ["individual-view", "clinical-analysis-grid", "individual-inferred-sex", "individual-mendelian-error", "json-view"]
+    */
+};

src/conf/opencga-job-browser.settings.js

@@ -0,0 +1,48 @@
+const opencgaJobBrowserSettings = {
+    /* menu: {
+        // merge criterium: it uses this `filters` array as filter for internal one. Each object is merged with spread operator
+        filters: [
+            {
+                id: "id"
+            },
+            {
+                id: "tool"
+            },
+            {
+                id: "input"
+            },
+            {
+                id: "internal.status.name"
+            },
+            {
+                id: "priority"
+            },
+            {
+                id: "tags"
+            },
+            {
+                id: "creationDate"
+            },
+            {
+                id: "visited"
+            }
+        ],
+        // merge criterium: full outer join-like. it adds objects presents in internal array only and in external array only. In case of same id, the external value overwrite the internal.
+        examples: [
+        ]
+    },
+    table: {
+        // merge criterium: spread operator
+        toolbar: {
+            showColumns: true,
+            showExport: false,
+            showDownload: true
+            // columns list for the dropdown will be added in grid components based on settings.table.columns
+        },
+        // merge criterium: uses this array as filter for internal 1D/2D array. It handles row/col span
+        columns: ["id",/!* "toolId", "status", "priority", "dependsOn", "output", "execution", "execution", "creationDate"*!/]
+    },
+    // merge criterium: uses this array as filter for internal 1D array.
+    detail: ["job-view", "job-log", "json-view"]
+    */
+};

src/conf/opencga-sample-browser.settings.js

@@ -0,0 +1,45 @@
+const opencgaSampleBrowserSettings = {
+    /* menu: {
+        // merge criterium: it uses this `filters` array as filter for internal one. Each object is merged with spread operator
+        filters: [
+            {
+                id: "id"
+            },
+            {
+                id: "individualId"
+            },
+            {
+                id: "fileIds"
+            },
+            {
+                id: "phenotypes"
+            },
+            {
+                id: "somatic"
+            },
+            {
+                id: "date"
+            },
+            {
+                id: "annotations"
+            }
+        ],
+        // merge criterium: full outer join-like. it adds objects presents in internal array only and in external array only. In case of same id, the external value overwrite the internal.
+        examples: [
+        ]
+    },
+    table: {
+        // merge criterium: spread operator
+        toolbar: {
+            showColumns: true,
+            showExport: false,
+            showDownload: true
+            // columns list for the dropdown will be added in grid components based on settings.table.columns
+        },
+        // merge criterium: uses this array as filter for internal 1D/2D array. It handles row/col span
+        columns: ["id", "individualId", "fileIds", "caseId", "collection.method", "processing.preparationMethod", "cellLine", "creationDate", "actions"]
+    },
+    // merge criterium: uses this array as filter for internal 1D array.
+    detail: ["sample-view", "sample-variant-stats-view", "samtools-flags-stats-view", "individual-view", "file-view", "json-view"]
+    */
+};