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adding plots to multiqc #213

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adding plots to multiqc

adding plots to multiqc #213

Triggered via pull request November 21, 2024 12:21
@kubranarcikubranarci
opened #108
add-multiqc-support
Status Failure
Total duration 17m 59s
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ci.yml

on: pull_request
Matrix: test
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28 errors and 12 warnings
Test pipeline for indel somatic variants, tested benchmarking methods are sompy.Params: --analysis 'somatic' --variant_type 'indel' --method 'sompy': Test pipeline for indel somatic variants, tested benchmarking methods are sompy#L1
Assertion failed: 1 of 2 assertions failed
latest-stable | docker | 6/6
Process completed with exit code 1.
Test pipeline for small germline variants, tested benchmarking methods are happy and rtgtools.-stub: Test pipeline for small germline variants, tested benchmarking methods are happy and rtgtools#L1
Assertion failed: 1 of 2 assertions failed
Test pipeline for snv somatic variants, tested benchmarking methods are sompy.-stub: Test pipeline for snv somatic variants, tested benchmarking methods are sompy#L1
Assertion failed: 1 of 2 assertions failed
24.04.2 | docker | 2/6
Process completed with exit code 1.
24.04.2 | docker | 6/6
Process completed with exit code 1.
Test pipeline for indel somatic variants, tested benchmarking methods are sompy.Params: --analysis 'somatic' --variant_type 'indel' --method 'sompy': Test pipeline for indel somatic variants, tested benchmarking methods are sompy#L1
Assertion failed: 1 of 2 assertions failed
Test pipeline for structural germline variants, tested benchmarking methods are truvari, svbenchmark and wittyer.-stub: Test pipeline for structural germline variants, tested benchmarking methods are truvari, svbenchmark and wittyer#L1
Assertion failed: 1 of 2 assertions failed
24.04.2 | docker | 4/6
Process completed with exit code 1.
latest-stable | docker | 4/6
Process completed with exit code 1.
Test pipeline for structural germline variants, tested benchmarking methods are truvari, svbenchmark and wittyer.-stub: Test pipeline for structural germline variants, tested benchmarking methods are truvari, svbenchmark and wittyer#L1
Assertion failed: 1 of 2 assertions failed
Test pipeline for small germline variants, tested benchmarking methods are happy and rtgtools.Params: --analysis 'germline' --variant_type 'small' --method 'happy,rtgtools' --liftover: Test pipeline for small germline variants, tested benchmarking methods are happy and rtgtools#L1
Assertion failed: 1 of 2 assertions failed
24.04.2 | docker | 5/6
Process completed with exit code 1.
latest-stable | docker | 5/6
Process completed with exit code 1.
Test pipeline for small germline variants, tested benchmarking methods are happy and rtgtools.Params: --analysis 'germline' --variant_type 'small' --method 'happy,rtgtools' --liftover: Test pipeline for small germline variants, tested benchmarking methods are happy and rtgtools#L1
Assertion failed: 1 of 2 assertions failed
latest-stable | docker | 3/6
Process completed with exit code 1.
Test pipeline for structural germline variants, tested benchmarking methods are truvari, svbenchmark and wittyer.Params: --analysis 'germline' --variant_type 'structural' --method 'truvari,svbenchmark,wittyer': Test pipeline for structural germline variants, tested benchmarking methods are truvari, svbenchmark and wittyer#L1
Assertion failed: 1 of 2 assertions failed
Test pipeline for structural somatic variants, tested benchmarking methods are truvari and svbenchmark.Params: --analysis 'somatic' --variant_type 'structural' --method 'truvari,svbenchmark': Test pipeline for structural somatic variants, tested benchmarking methods are truvari and svbenchmark#L1
Assertion failed: 1 of 2 assertions failed
Test pipeline for small germline variants, tested benchmarking methods are happy and rtgtools.Params: --analysis 'germline' --variant_type 'small' --method 'happy,rtgtools': Test pipeline for small germline variants, tested benchmarking methods are happy and rtgtools#L1
Assertion failed: 1 of 2 assertions failed
latest-stable | docker | 1/6
Process completed with exit code 1.
24.04.2 | docker | 3/6
Process completed with exit code 1.
Test pipeline for structural germline variants, tested benchmarking methods are truvari, svbenchmark and wittyer.Params: --analysis 'germline' --variant_type 'structural' --method 'truvari,svbenchmark,wittyer': Test pipeline for structural germline variants, tested benchmarking methods are truvari, svbenchmark and wittyer#L1
Assertion failed: 1 of 2 assertions failed
Test pipeline for structural somatic variants, tested benchmarking methods are truvari and svbenchmark.Params: --analysis 'somatic' --variant_type 'structural' --method 'truvari,svbenchmark': Test pipeline for structural somatic variants, tested benchmarking methods are truvari and svbenchmark#L1
Assertion failed: 1 of 2 assertions failed
Test pipeline for small germline variants, tested benchmarking methods are happy and rtgtools.Params: --analysis 'germline' --variant_type 'small' --method 'happy,rtgtools': Test pipeline for small germline variants, tested benchmarking methods are happy and rtgtools#L1
Assertion failed: 1 of 2 assertions failed
24.04.2 | docker | 1/6
Process completed with exit code 1.
Test pipeline for small germline variants, tested benchmarking methods are happy and rtgtools.-stub: Test pipeline for small germline variants, tested benchmarking methods are happy and rtgtools#L1
Assertion failed: 1 of 2 assertions failed
Test pipeline for snv somatic variants, tested benchmarking methods are sompy.-stub: Test pipeline for snv somatic variants, tested benchmarking methods are sompy#L1
Assertion failed: 1 of 2 assertions failed
latest-stable | docker | 2/6
Process completed with exit code 1.
latest-stable | docker | 6/6
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
24.04.2 | docker | 2/6
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
24.04.2 | docker | 6/6
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
24.04.2 | docker | 4/6
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
latest-stable | docker | 4/6
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
24.04.2 | docker | 5/6
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
latest-stable | docker | 5/6
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
latest-stable | docker | 3/6
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
latest-stable | docker | 1/6
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
24.04.2 | docker | 3/6
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
24.04.2 | docker | 1/6
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
latest-stable | docker | 2/6
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/