Bump STAR modules #194
GitHub Actions / JUnit Test Report
failed
Dec 19, 2024 in 0s
4 tests run, 2 passed, 0 skipped, 2 failed.
Annotations
Check failure on line 1 in Test Subworkflow ALIGN_STAR
github-actions / JUnit Test Report
Test Subworkflow ALIGN_STAR.star - no igenomes
Assertion failed:
1 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.04.2
Launching `/home/runner/work/rnaseq/rnaseq/.nf-test-2be7ff0e2973c5db734bd832f73cd98f.nf` [shrivelled_woese] DSL2 - revision: a4e6d11464
Downloading plugin [email protected]
Downloading plugin [email protected]
[69/902755] Submitted process > STAR_GENOMEGENERATE (genome.fasta)
[55/5b7293] Submitted process > ALIGN_STAR:STAR_ALIGN (test)
[59/297efb] Submitted process > ALIGN_STAR:BAM_SORT_STATS_SAMTOOLS:SAMTOOLS_SORT (test)
[b0/92dfee] Submitted process > ALIGN_STAR:BAM_SORT_STATS_SAMTOOLS:SAMTOOLS_INDEX (test)
[8c/891a0d] Submitted process > ALIGN_STAR:BAM_SORT_STATS_SAMTOOLS:BAM_STATS_SAMTOOLS:SAMTOOLS_FLAGSTAT (test)
[25/1bcfec] Submitted process > ALIGN_STAR:BAM_SORT_STATS_SAMTOOLS:BAM_STATS_SAMTOOLS:SAMTOOLS_IDXSTATS (test)
[d6/778388] Submitted process > ALIGN_STAR:BAM_SORT_STATS_SAMTOOLS:BAM_STATS_SAMTOOLS:SAMTOOLS_STATS (test)
Nextflow stderr:
Nextflow 24.10.3 is available - Please consider updating your version to it
Check failure on line 1 in Test Subworkflow ALIGN_STAR
github-actions / JUnit Test Report
Test Subworkflow ALIGN_STAR.star - no igenomes - stub
Assertion failed:
1 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.04.2
Launching `/home/runner/work/rnaseq/rnaseq/.nf-test-e6f40b40a8b79e7710f02593d6906ead.nf` [scruffy_boyd] DSL2 - revision: a4e6d11464
[da/c10cd8] Submitted process > STAR_GENOMEGENERATE (genome.fasta)
[fd/b1181e] Submitted process > ALIGN_STAR:STAR_ALIGN (test)
[c3/78b17e] Submitted process > ALIGN_STAR:BAM_SORT_STATS_SAMTOOLS:SAMTOOLS_SORT (test)
[e5/afb8c0] Submitted process > ALIGN_STAR:BAM_SORT_STATS_SAMTOOLS:SAMTOOLS_INDEX (test)
[3d/81103d] Submitted process > ALIGN_STAR:BAM_SORT_STATS_SAMTOOLS:BAM_STATS_SAMTOOLS:SAMTOOLS_FLAGSTAT (test)
[86/d77a01] Submitted process > ALIGN_STAR:BAM_SORT_STATS_SAMTOOLS:BAM_STATS_SAMTOOLS:SAMTOOLS_IDXSTATS (test)
[3f/0bef3a] Submitted process > ALIGN_STAR:BAM_SORT_STATS_SAMTOOLS:BAM_STATS_SAMTOOLS:SAMTOOLS_STATS (test)
Nextflow stderr:
Nextflow 24.10.3 is available - Please consider updating your version to it
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