update samtools version

nf-core · Dec 19, 2024 · 7955857 · 7955857
1 parent b0c583a
commit 7955857
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Showing 7 changed files with 20 additions and 20 deletions.
diff --git a/tests/default.nf.test.snap b/tests/default.nf.test.snap
@@ -35,7 +35,7 @@
                 },
                 "STAR_GENOMEGENERATE": {
                     "star": "2.7.11b",
-                    "samtools": 1.2,
+                    "samtools": 1.21,
                     "gawk": "5.1.0"
                 },
                 "TRIMGALORE": {
@@ -209,12 +209,12 @@
                 },
                 "STAR_ALIGN": {
                     "star": "2.7.11b",
-                    "samtools": 1.2,
+                    "samtools": 1.21,
                     "gawk": "5.1.0"
                 },
                 "STAR_GENOMEGENERATE": {
                     "star": "2.7.11b",
-                    "samtools": 1.2,
+                    "samtools": 1.21,
                     "gawk": "5.1.0"
                 },
                 "STRINGTIE_STRINGTIE": {

diff --git a/tests/featurecounts_group_type.nf.test.snap b/tests/featurecounts_group_type.nf.test.snap
@@ -35,7 +35,7 @@
                 },
                 "STAR_GENOMEGENERATE": {
                     "star": "2.7.11b",
-                    "samtools": 1.2,
+                    "samtools": 1.21,
                     "gawk": "5.1.0"
                 },
                 "TRIMGALORE": {
@@ -206,12 +206,12 @@
                 },
                 "STAR_ALIGN": {
                     "star": "2.7.11b",
-                    "samtools": 1.2,
+                    "samtools": 1.21,
                     "gawk": "5.1.0"
                 },
                 "STAR_GENOMEGENERATE": {
                     "star": "2.7.11b",
-                    "samtools": 1.2,
+                    "samtools": 1.21,
                     "gawk": "5.1.0"
                 },
                 "STRINGTIE_STRINGTIE": {

diff --git a/tests/min_mapped_reads.nf.test.snap b/tests/min_mapped_reads.nf.test.snap
@@ -106,12 +106,12 @@
                 },
                 "STAR_ALIGN": {
                     "star": "2.7.11b",
-                    "samtools": 1.2,
+                    "samtools": 1.21,
                     "gawk": "5.1.0"
                 },
                 "STAR_GENOMEGENERATE": {
                     "star": "2.7.11b",
-                    "samtools": 1.2,
+                    "samtools": 1.21,
                     "gawk": "5.1.0"
                 },
                 "STRINGTIE_STRINGTIE": {
@@ -1235,7 +1235,7 @@
                 },
                 "STAR_GENOMEGENERATE": {
                     "star": "2.7.11b",
-                    "samtools": 1.2,
+                    "samtools": 1.21,
                     "gawk": "5.1.0"
                 },
                 "TRIMGALORE": {

diff --git a/tests/remove_ribo_rna.nf.test.snap b/tests/remove_ribo_rna.nf.test.snap
@@ -112,12 +112,12 @@
                 },
                 "STAR_ALIGN": {
                     "star": "2.7.11b",
-                    "samtools": 1.2,
+                    "samtools": 1.21,
                     "gawk": "5.1.0"
                 },
                 "STAR_GENOMEGENERATE": {
                     "star": "2.7.11b",
-                    "samtools": 1.2,
+                    "samtools": 1.21,
                     "gawk": "5.1.0"
                 },
                 "STRINGTIE_STRINGTIE": {
@@ -1449,7 +1449,7 @@
                 },
                 "STAR_GENOMEGENERATE": {
                     "star": "2.7.11b",
-                    "samtools": 1.2,
+                    "samtools": 1.21,
                     "gawk": "5.1.0"
                 },
                 "TRIMGALORE": {

diff --git a/tests/skip_qc.nf.test.snap b/tests/skip_qc.nf.test.snap
@@ -32,7 +32,7 @@
                 },
                 "STAR_GENOMEGENERATE": {
                     "star": "2.7.11b",
-                    "samtools": 1.2,
+                    "samtools": 1.21,
                     "gawk": "5.1.0"
                 },
                 "TRIMGALORE": {
@@ -154,12 +154,12 @@
                 },
                 "STAR_ALIGN": {
                     "star": "2.7.11b",
-                    "samtools": 1.2,
+                    "samtools": 1.21,
                     "gawk": "5.1.0"
                 },
                 "STAR_GENOMEGENERATE": {
                     "star": "2.7.11b",
-                    "samtools": 1.2,
+                    "samtools": 1.21,
                     "gawk": "5.1.0"
                 },
                 "STRINGTIE_STRINGTIE": {

diff --git a/tests/skip_trimming.nf.test.snap b/tests/skip_trimming.nf.test.snap
@@ -106,12 +106,12 @@
                 },
                 "STAR_ALIGN": {
                     "star": "2.7.11b",
-                    "samtools": 1.2,
+                    "samtools": 1.21,
                     "gawk": "5.1.0"
                 },
                 "STAR_GENOMEGENERATE": {
                     "star": "2.7.11b",
-                    "samtools": 1.2,
+                    "samtools": 1.21,
                     "gawk": "5.1.0"
                 },
                 "STRINGTIE_STRINGTIE": {

diff --git a/tests/umi.nf.test.snap b/tests/umi.nf.test.snap
@@ -100,12 +100,12 @@
                 },
                 "STAR_ALIGN": {
                     "star": "2.7.11b",
-                    "samtools": 1.2,
+                    "samtools": 1.21,
                     "gawk": "5.1.0"
                 },
                 "STAR_GENOMEGENERATE": {
                     "star": "2.7.11b",
-                    "samtools": 1.2,
+                    "samtools": 1.21,
                     "gawk": "5.1.0"
                 },
                 "STRINGTIE_STRINGTIE": {
@@ -2733,7 +2733,7 @@
                 },
                 "STAR_GENOMEGENERATE": {
                     "star": "2.7.11b",
-                    "samtools": 1.2,
+                    "samtools": 1.21,
                     "gawk": "5.1.0"
                 },
                 "TRIMGALORE": {