Merge branch 'main' of https://github.com/mskcc/igo-demux

mskcc · Feb 2, 2025 · 040962f · 040962f
2 parents cfc92fb + 43670c2
commit 040962f
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/stats_by_project_dag.py b/stats_by_project_dag.py
@@ -96,7 +96,7 @@ def run_stats(ds, **kwargs):
                 print(cmd)
                 subprocess.run(cmd, shell=True)
 
-        elif "SC_Chromium" in recipe:
+        elif "SC_Chromium" in recipe or "ST_Visium" in recipe:
             scripts.cellranger.launch_cellranger_by_project_location(project_directory, recipe, species)
         elif "Nanopore" in recipe:
             cmd = "bsub -J ont_stats_{} -n 16 -M 16 /igo/work/nabors/tools/venvpy3/bin/python /igo/work/igo/igo-demux/scripts/ont_stats.py {}".format(project_id, project_directory)