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Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms
Perl 380 219
Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.
R 147 68
Filters for false-positive mutation calls in NGS
R 30 21
Forked from rhshah/iCallSV
A Framework to call Structural Variants from NGS based datasets
Python 3 1
Create mutation signatures from MAF's, and decompose them into Stratton signatures
R 60 30
Demultiplex Illumina sequencer output via DRAGEN, create fastq files and launch pipelines
Sample QC with nodejs backend
Voyager Backend
The CWL bam generator for ARGOS, separated into its own repo
SMILE messaging service for handling CMO label generation
Pipeline for computing neoantigen qualities from DNA and RNA-Seq data
Delivery email, symlinks and permissions for IGO projects
Working repo for Argos pipeline documentation
A portable and reproducible pipeline for targeted analysis
CCS research pipeline to process WES and WGS TN pairs
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