Merge pull request #108 from morinlab/ryan

Ryan

DESCRIPTION

@@ -1,6 +1,6 @@
 Package: GAMBLR.data
 Title: Collection of Curated Data for Genomic Analysis of Mature B-cell Lymphomas in R
-Version: 1.2
+Version: 1.3
 Authors@R:
     c(
         person(given = "Ryan",
@@ -34,6 +34,6 @@ Imports:
     ggplot2,
     tidyr
 LazyDataCompression: xz
-Suggests: 
+Suggests:
     testthat (>= 3.0.0)
 Config/testthat/edition: 3

R/data-vars.R

@@ -10,3 +10,21 @@ coding_class = c("Frame_Shift_Del", "Frame_Shift_Ins", "In_Frame_Del",
                  "In_Frame_Ins", "Missense_Mutation", "Nonsense_Mutation", 
                  "Nonstop_Mutation", "Silent", "Splice_Region", 
                  "Splice_Site", "Targeted_Region", "Translation_Start_Site")
+
+if (getRversion() >= "2.15.1") {
+  utils::globalVariables(c(
+    ".", ":=", "CHROM_A", "CHROM_B", "CN", "Chromosome", 
+    "End_Position", "End_Position.x", "FILTER", "Gene", 
+    "HGVSp_Short", "Hugo_Symbol", "ID", "LOH", "LOH_flag", 
+    "SCORE", "START_A", "START_B", "Start_Position", "Start_Position.x", 
+    "Tumor_Sample_Barcode", "VAF_tumour", "Variant_Classification", 
+    "bin", "category", "chrom", "cohort", "colour", "curated", "end", 
+    "ensembl_gene_id", "gambl_metadata", "gene", "genome_build", 
+    "grch37_ashm_regions", "group", "head", "hg38_ashm_regions", 
+    "hot_spot", "hotspot_regions_grch37", "hotspot_regions_hg38", 
+    "is_alias", "log.ratio", "mutated", "mutation_count", "n_mut", 
+    "name", "pair_status", "pathology", "patient_id", "region", 
+    "row_id", "sample_id", "seq_type", "start", "t_alt_count", 
+    "tumour_sample_id", "window_end", "window_start"
+  ))
+}