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14 Open 298 Closed
14 Open 298 Closed
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Issues list

Issue with demultiplexing for specific run folder with -r flag
#554 opened Sep 13, 2024 by wintun12
Look at usage of sys.exit(1)
#533 opened Apr 23, 2024 by RachelDuffin
Use tmp_path / tmp_factory_path in testing temp files
#531 opened Mar 4, 2024 by RachelDuffin
Remove all hardcoded paths / secrets as env variables / a configuration service
#530 opened Mar 4, 2024 by RachelDuffin
1
Remove WES and SNP
#529 opened Feb 21, 2024 by RachelDuffin
Do we want to send samples being processed emails to rest of teams
#528 opened Feb 7, 2024 by RachelDuffin
1
Switch hard coded paths to cmd line inputs
#527 opened Feb 6, 2024 by RachelDuffin
Remove any emails from list and instead store in a separate configuration file on the workstation
#518 opened Nov 23, 2023 by RachelDuffin
Implement an exponential backoff strategy for retries when uploading to DNA Nexus
#516 opened Nov 13, 2023 by Graeme-Smith
Create a github actions page that can be accessed by both the team / other teams
#474 opened Feb 13, 2023 by RachelDuffin
Add congenica upload app version to WES query
#458 opened Dec 9, 2022 by RachelDuffin
Add dmpla - use adx as a example - we want to run fastqc and multiqc. congenica upload = false
#438 opened Nov 1, 2022 by aledj2
2
LRPCR-SMN1 congenica upload fails due to incorrect project ID
#424 opened Sep 5, 2022 by natashapinto
1
Pass commands a list to subprocess. Only use shell=True if required.
#262 opened Jan 15, 2020 by NMNS93
2
ProTip! Add no:assignee to see everything that’s not assigned.