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Issue with demultiplexing for specific run folder with -r flag #554

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wintun12 opened this issue Sep 13, 2024 · 0 comments
Open

Issue with demultiplexing for specific run folder with -r flag #554

wintun12 opened this issue Sep 13, 2024 · 0 comments

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@wintun12
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There is an issue with running manual demultiplexing for specific run folder with -r flag.
I think the issue lies in line 85 of demultiplex.py, where runfolder_names = [self.runfolder_names] should be runfolder_names = [runfolder_names]. self.runfolder_names has not been defined yet when the code in line 85 is trying to call it.

This issue only occurs when the run folder name is provided (e.g. -r <run_folder_name>). If the run folder name is not provided, this line is skipped so no issue. Cron job command line in the workstation does not have -r flag since it does not run for specific run folder, so it's not issue with current cron job command.

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