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67 Open 299 Closed
67 Open 299 Closed
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Issues list

Allow any value in the "period_by" column in *_allele_frequencies_advanced() enhancement New feature or request question Further information is requested usability
#723 opened Feb 4, 2025 by leehart
2
Add a "taxon_by" parameter to snp_allele_frequencies_advanced() enhancement New feature or request
#722 opened Feb 4, 2025 by leehart
@leehart
possible bug in plot_fst_gwss? low hanging fruit 🍎 usability
#721 opened Feb 3, 2025 by EricRLucas
3
Add constructor args to restrict data according to terms-of-use info and surveillance flags enhancement New feature or request
#716 opened Jan 28, 2025 by leehart 2025Q1
@leehart
1
FileNotFoundError: '.zmetadata' on variant_calls() question Further information is requested
#712 opened Jan 23, 2025 by jchiefelk
7
Update Zarr-python to version 3 performance
#710 opened Jan 16, 2025 by sanjaynagi
1
Inclusion of Anopheles darlingi API enhancement New feature or request high priority
#707 opened Jan 14, 2025 by leehart 2025Q1
Inclusion of Anopheles stephensi API enhancement New feature or request high priority
#706 opened Jan 14, 2025 by leehart 2025Q1
@leehart
Admixture stats (f3, f4, …) enhancement New feature or request
#705 opened Jan 14, 2025 by leehart 2025Q1
@alimanfoo @KellyLBennett
Add tests on simulated data for karyotype low priority
#700 opened Dec 11, 2024 by jonbrenas
2
Moving inversion tags to gcs postponed
#697 opened Dec 11, 2024 by jonbrenas
Occasional failures with test_g123_...[af1_sim] bug Something isn't working
#695 opened Dec 10, 2024 by leehart
Pairwise FST function running time performance
#692 opened Dec 9, 2024 by KellyLBennett
1
Refactoring karyotype maintenance
#689 opened Dec 6, 2024 by jonbrenas
@jonbrenas
1
Resistance association testing for specific variants BMGF-062921 Work supported by BMGF grant INV-062921 (EAVeS). enhancement New feature or request
#685 opened Dec 4, 2024 by alimanfoo
Genome-wide association testing with haplotype data BMGF-062921 Work supported by BMGF grant INV-062921 (EAVeS). enhancement New feature or request
#684 opened Dec 4, 2024 by alimanfoo
Genome-wide association testing with CNV data BMGF-062921 Work supported by BMGF grant INV-062921 (EAVeS). enhancement New feature or request
#683 opened Dec 4, 2024 by alimanfoo 2025Q1
1
Faster CI maintenance performance
#682 opened Dec 3, 2024 by alimanfoo
3
Support Python 3.13 / Numpy 2.1 maintenance
#681 opened Dec 3, 2024 by alimanfoo
1
Genome-wide association testing with SNP data BMGF-062921 Work supported by BMGF grant INV-062921 (EAVeS). enhancement New feature or request
#679 opened Dec 3, 2024 by alimanfoo
1
Plot frequencies as pie charts on a map enhancement New feature or request
#678 opened Dec 3, 2024 by alimanfoo 2025Q1
@leehart @ahernank
2
cnv_discordant_read_calls has a contig param but supports contigs maintenance usability
#674 opened Nov 29, 2024 by leehart
@leehart
4
Occasional test failure in test_plot_frequencies_time_series_with_taxa bug Something isn't working
#671 opened Nov 28, 2024 by leehart
@leehart
1
plot_frequencies_heatmap is not in the correct file maintenance question Further information is requested
#664 opened Nov 25, 2024 by jonbrenas
@jonbrenas
3
Moving things around: cnv_frequencies is treated differently from snp_frequencies and hap_frequencies, and plot_frequencies_heatmap is not in a good place maintenance
#661 opened Nov 22, 2024 by jonbrenas
@jonbrenas
3
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