Move remainder of CI to github

.github/PULL_REQUEST_TEMPLATE.md

@@ -0,0 +1,9 @@
+## Background
+
+## Description of Changes
+
+## Checklist
+
+- [ ] New features are documented
+- [ ] Tests added for bug fixes and new features
+- [ ] (@lanl.gov employees) Update copyright on changed files

.github/workflows/ci.yml

@@ -0,0 +1,93 @@
+# ========================================================================================
+#  (C) (or copyright) 2024. Triad National Security, LLC. All rights reserved.
+#
+#  This program was produced under U.S. Government contract 89233218CNA000001 for Los
+#  Alamos National Laboratory (LANL), which is operated by Triad National Security, LLC
+#  for the U.S. Department of Energy/National Nuclear Security Administration. All rights
+#  in the program are reserved by Triad National Security, LLC, and the U.S. Department
+#  of Energy/National Nuclear Security Administration. The Government is granted for
+#  itself and others acting on its behalf a nonexclusive, paid-up, irrevocable worldwide
+#  license in this material to reproduce, prepare derivative works, distribute copies to
+#  the public, perform publicly and display publicly, and to permit others to do so.
+# ========================================================================================
+
+# This file was created in part or in whole by one of OpenAI's generative AI models
+
+name: Continuous Integration
+
+on:
+  pull_request:
+    types: [opened, synchronize, reopened]
+
+# Cancel outdated workflows
+concurrency:
+  group: ${{ github.workflow }}-${{ github.head_ref || github.ref }}
+  cancel-in-progress: true
+
+jobs:
+  format:
+    if: >
+      ${{ !contains(github.event.pull_request.title, 'Draft:') &&
+          !contains(github.event.pull_request.title, 'WIP:') }}
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v3
+        with:
+          submodules: recursive
+      - name: Set up Python
+        uses: actions/setup-python@v4
+        with:
+          python-version: '3.x'  # Specify the Python version you need
+      - name: Install dependencies
+        run: |
+          pip install black
+      - name: Run format check
+        run: |
+          source env/bash
+          VERBOSE=1 ./style/format.sh
+          git diff --exit-code --ignore-submodules
+
+  cpu:
+    if: >
+      ${{ !contains(github.event.pull_request.title, 'Draft:') &&
+          !contains(github.event.pull_request.title, 'WIP:') }}
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v3
+        with:
+          submodules: recursive
+      - name: Install dependencies
+        run: |
+          sudo apt-get update -qq
+          sudo apt-get install -qq --no-install-recommends tzdata
+          sudo apt-get install -qq git
+          sudo apt-get install -qq make cmake g++
+          sudo apt-get install -qq libopenmpi-dev libhdf5-openmpi-dev
+          sudo apt-get install -qq openssh-client
+          sudo apt-get install -qq python3 python3-numpy python3-h5py python3-matplotlib
+      - name: Run CPU tests
+        run: |
+          export MAKE_PROGRAM=make
+          cd tst
+          mkdir -p build
+          cd build
+          cmake --preset=cpu-release ../../
+          make -j 4
+          cd ..
+          python3 run_tests.py regression.suite \
+            --exe build/src/artemis \
+            --log_file=ci_cpu_log.txt
+      - name: Upload CPU test log
+        if: always()
+        uses: actions/upload-artifact@v3
+        with:
+          name: ci_cpu_log.txt
+          path: tst/ci_cpu_log.txt
+          retention-days: 3
+      - name: Upload figures
+        if: always()
+        uses: actions/upload-artifact@v3
+        with:
+          name: figs
+          path: tst/figs
+          retention-days: 3

.github/workflows/docs.yml

@@ -1,3 +1,15 @@
+# ========================================================================================
+#  (C) (or copyright) 2024. Triad National Security, LLC. All rights reserved.
+#
+#  This program was produced under U.S. Government contract 89233218CNA000001 for Los
+#  Alamos National Laboratory (LANL), which is operated by Triad National Security, LLC
+#  for the U.S. Department of Energy/National Nuclear Security Administration. All rights
+#  in the program are reserved by Triad National Security, LLC, and the U.S. Department
+#  of Energy/National Nuclear Security Administration. The Government is granted for
+#  itself and others acting on its behalf a nonexclusive, paid-up, irrevocable worldwide
+#  license in this material to reproduce, prepare derivative works, distribute copies to
+#  the public, perform publicly and display publicly, and to permit others to do so.
+# ========================================================================================
 
 name: Build And Deploy Docs
 
@@ -31,5 +43,5 @@ jobs:
         uses: peaceiris/actions-gh-pages@v4
         with:
           github_token: ${{ secrets.GITHUB_TOKEN }}
-          publish_dir: ./public          
+          publish_dir: ./public
           force_orphan: true

.github/workflows/nightly.yml

@@ -0,0 +1,70 @@
+# ========================================================================================
+#  (C) (or copyright) 2024. Triad National Security, LLC. All rights reserved.
+#
+#  This program was produced under U.S. Government contract 89233218CNA000001 for Los
+#  Alamos National Laboratory (LANL), which is operated by Triad National Security, LLC
+#  for the U.S. Department of Energy/National Nuclear Security Administration. All rights
+#  in the program are reserved by Triad National Security, LLC, and the U.S. Department
+#  of Energy/National Nuclear Security Administration. The Government is granted for
+#  itself and others acting on its behalf a nonexclusive, paid-up, irrevocable worldwide
+#  license in this material to reproduce, prepare derivative works, distribute copies to
+#  the public, perform publicly and display publicly, and to permit others to do so.
+# ========================================================================================
+
+# This file was created in part or in whole by one of OpenAI's generative AI models
+
+name: Nightly Tests
+
+on:
+  schedule:
+    - cron: '0 0 * * *'  # Runs daily at midnight; adjust as needed
+
+jobs:
+  cpu:
+    runs-on: ubuntu-latest
+    env:
+      MAKE_PROGRAM: ${{ env.MAKE_PROGRAM || 'make' }}
+    steps:
+      - uses: actions/checkout@v3
+        with:
+          submodules: recursive
+      - name: Install dependencies
+        run: |
+          sudo apt-get update -qq
+          sudo apt-get install -qq --no-install-recommends tzdata
+          sudo apt-get install -qq git
+          sudo apt-get install -qq make cmake g++
+          sudo apt-get install -qq libopenmpi-dev libhdf5-openmpi-dev
+          sudo apt-get install -qq openssh-client
+          sudo apt-get install -qq python3 python3-numpy python3-h5py python3-matplotlib
+      - name: Update Parthenon submodule
+        run: |
+          cd external/parthenon
+          git pull origin develop
+          echo "==> Current Parthenon commit hash:"
+          git rev-parse HEAD
+      - name: Run CPU tests
+        run: |
+          cd tst
+          mkdir -p build
+          cd build
+          cmake -DCMAKE_CXX_COMPILER=g++ -DCMAKE_C_COMPILER=gcc ../../
+          make -j 4
+          cd ..
+          python3 run_tests.py regression.suite \
+            --exe build/src/artemis \
+            --log_file=ci_cpu_log.txt
+      - name: Upload CPU test log
+        if: always()
+        uses: actions/upload-artifact@v3
+        with:
+          name: ci_cpu_log.txt
+          path: tst/ci_cpu_log.txt
+          retention-days: 3
+      - name: Upload figures
+        if: always()
+        uses: actions/upload-artifact@v3
+        with:
+          name: figs
+          path: tst/figs
+          retention-days: 3

.gitignore

@@ -22,6 +22,10 @@ debug*
 doc/_build/*
 doc/src/parameters.rst
 
+# CI files
+artemis_ci_*.out
+tst/figs
+
 # Visualization package files
 .smhist