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feat: check for no query qualities Python package #987: Commit 834210b pushed by msto
January 21, 2025 20:55 1m 3s ms_fix-sum-of-query-qualities
ms_fix-sum-of-query-qualities
January 21, 2025 20:55 1m 3s
Add tabix indexing of gzipped VCFs in VariantBuilder (#214) Python package #986: Commit c5eb469 pushed by tfenne
January 21, 2025 20:45 1m 0s main
main
January 21, 2025 20:45 1m 0s
Added force=True Python package #985: Commit 808bafb pushed by tfenne
January 21, 2025 20:42 1m 2s tf_vcf_builder_add_indexing
tf_vcf_builder_add_indexing
January 21, 2025 20:42 1m 2s
Added to docstring. Python package #984: Commit 75523b7 pushed by tfenne
January 21, 2025 20:40 57s tf_vcf_builder_add_indexing
tf_vcf_builder_add_indexing
January 21, 2025 20:40 57s
Make sure VcfHeaderNumber.value is called in VariantBuilder. (#215) Python package #983: Commit 951ec0d pushed by tfenne
January 17, 2025 21:24 3m 39s main
main
January 17, 2025 21:24 3m 39s
Make mypy happy. Python package #982: Commit de379a7 pushed by tfenne
January 17, 2025 21:10 3m 34s tf_vcf_allele_number_fix
tf_vcf_allele_number_fix
January 17, 2025 21:10 3m 34s
Make sure VcfHeaderNumber.value is called in VariantBuilder. Python package #981: Commit 063b979 pushed by tfenne
January 17, 2025 21:04 41s tf_vcf_allele_number_fix
tf_vcf_allele_number_fix
January 17, 2025 21:04 41s
Add tabix indexing of gzipped VCFs in VcfBuilder Python package #980: Commit 24122f4 pushed by tfenne
January 17, 2025 20:05 3m 36s tf_vcf_builder_add_indexing
tf_vcf_builder_add_indexing
January 17, 2025 20:05 3m 36s
fix: close fh and remove obsolete comment Python package #979: Commit 8512844 pushed by TimD1
January 16, 2025 14:01 58s 176_td_add-read-seq-dict
176_td_add-read-seq-dict
January 16, 2025 14:01 58s
fix: added test for invalid input Python package #978: Commit c69320f pushed by TimD1
January 14, 2025 20:02 1m 7s 176_td_add-read-seq-dict
176_td_add-read-seq-dict
January 14, 2025 20:02 1m 7s
fix: style, remove test file in favor of SamBuilder Python package #977: Commit 45f7eca pushed by TimD1
January 14, 2025 19:48 3m 41s 176_td_add-read-seq-dict
176_td_add-read-seq-dict
January 14, 2025 19:48 3m 41s
chore: add type-ignore back Python package #976: Commit c01e6dc pushed by msto
January 13, 2025 20:16 3m 34s ms_fix-sum-of-query-qualities
ms_fix-sum-of-query-qualities
January 13, 2025 20:16 3m 34s
fix: sum_of_base_qualities should be zero when a read has no base qua… Python package #975: Commit 0261da9 pushed by msto
January 13, 2025 18:23 44s ms_fix-sum-of-query-qualities
ms_fix-sum-of-query-qualities
January 13, 2025 18:23 44s
chore: protect against '*' edge case Python package #974: Commit e271e6c pushed by clintval
January 13, 2025 17:54 1m 0s cv_aux_alignment_hierarchy
cv_aux_alignment_hierarchy
January 13, 2025 17:54 1m 0s
chore: remove dead code Python package #973: Commit 7055cb5 pushed by clintval
January 10, 2025 21:34 1m 1s cv_aux_alignment_hierarchy
cv_aux_alignment_hierarchy
January 10, 2025 21:34 1m 1s
chore: tiny logical improvement Python package #972: Commit da497e7 pushed by clintval
January 10, 2025 21:27 58s cv_aux_alignment_hierarchy
cv_aux_alignment_hierarchy
January 10, 2025 21:27 58s
chore: get to 100% test coverage Python package #971: Commit 88d6452 pushed by clintval
January 10, 2025 20:47 1m 0s cv_aux_alignment_hierarchy
cv_aux_alignment_hierarchy
January 10, 2025 20:47 1m 0s
chore: relax which records we can build auxes from Python package #970: Commit 0c5a14f pushed by clintval
January 10, 2025 20:41 1m 1s cv_aux_alignment_hierarchy
cv_aux_alignment_hierarchy
January 10, 2025 20:41 1m 1s
chore: fix f-string syntax Python package #969: Commit e7f2ae2 pushed by clintval
January 10, 2025 20:31 1m 4s cv_aux_alignment_hierarchy
cv_aux_alignment_hierarchy
January 10, 2025 20:31 1m 4s
chore: suit some of Tim's review Python package #968: Commit f8d56d0 pushed by clintval
January 10, 2025 20:26 32s cv_aux_alignment_hierarchy
cv_aux_alignment_hierarchy
January 10, 2025 20:26 32s
docs: update module docstring Python package #967: Commit e0700de pushed by clintval
January 10, 2025 16:54 1m 1s cv_aux_alignment_hierarchy
cv_aux_alignment_hierarchy
January 10, 2025 16:54 1m 1s
Add AuxAlignment for parsing secondary/supplementary alignments in SA… Python package #966: Commit 302bf2a pushed by clintval
January 10, 2025 16:51 1m 2s cv_aux_alignment_hierarchy
cv_aux_alignment_hierarchy
January 10, 2025 16:51 1m 2s
Add a class for parsing secondary alignments from XA/XB Python package #965: Commit 2369449 pushed by clintval
January 10, 2025 16:48 1m 7s cv_aux_alignment_hierarchy
cv_aux_alignment_hierarchy
January 10, 2025 16:48 1m 7s
Add a class for parsing secondary alignments from XA/XB Python package #964: Commit 6d887a1 pushed by clintval
January 10, 2025 14:53 58s cv_aux_alignment_hierarchy
cv_aux_alignment_hierarchy
January 10, 2025 14:53 58s
feat: mate info can only come from a primary record Python package #963: Commit 0649c67 pushed by clintval
January 10, 2025 13:44 3m 40s cv_fix_mates_secondary_supplementary
cv_fix_mates_secondary_supplementary
January 10, 2025 13:44 3m 40s