mustache - Tool box to identify mobile element insertions from short-read sequencing data

The command-line tool mustache identifies large insertions and genotypes from short-read sequencing data.

It is designed to work with haploid genomes, and has been tested extensively on bacteria.

It can identify mobile genetic elements and their sites of insertion using a de novo approach.

Follow the links below to learn more.

Table of Contents

1. How it works
2. Install or update software
3. Step-by-step tutorial
4. Detailed user manual

Preprint

Durrant, Matthew, Michelle M. Li, Benjamin Siranosian, and Ami S. Bhatt. 2019. "Mobile Genetic Element Insertions Drive Antibiotic Resistance across Pathogens. bioRxiv.

Questions / Comments

Please submit any questions or comments to our issues handler.