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Pull requests: broadinstitute/warp

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Pull requests list

add pairedtag diagram and fix snm3c slug
#1469 opened Jan 7, 2025 by rsc3 Loading…
3 tasks
6
TSPS-341 remove tasks for recovering variants not in the reference panel
#1468 opened Jan 7, 2025 by jsotobroad Loading…
3 tasks
Lk rnawithumis testing
#1467 opened Jan 7, 2025 by ekiernan Loading…
3
Testing Variant Calling
#1464 opened Jan 6, 2025 by jessicaway Loading…
3 tasks
7
Allow reblocking TDR/DRS VCFs
#1463 opened Jan 5, 2025 by kshakir Loading…
3 tasks
1
Np jw test illumina genotyping arrays
#1458 opened Jan 3, 2025 by nikellepetrillo Loading…
3 tasks
54
Bump jinja2 from 3.1.4 to 3.1.5 in /verification/test-wdls/scripts dependencies Pull requests that update a dependency file python Pull requests that update Python code
#1454 opened Dec 24, 2024 by dependabot bot Loading…
1
Fk build indices marmoset
#1450 opened Dec 18, 2024 by khajoue2 Loading…
1 task done
3
Bump nanoid from 3.3.6 to 3.3.8 in /website dependencies Pull requests that update a dependency file javascript Pull requests that update Javascript code
#1449 opened Dec 13, 2024 by dependabot bot Loading…
1
Update HaplotypeCaller_GATK4_VCF to use MEM_SIZE and MEM_UNIT
#1448 opened Dec 9, 2024 by kshakir Loading…
3 tasks
1
Addressing changelog check error
#1445 opened Dec 5, 2024 by jessicaway Loading…
3 tasks
3
Update output names for ReblockGVCF
#1443 opened Dec 3, 2024 by jessicaway Loading…
2 of 3 tasks
33
PD-2757: Add Optimus as first task to the Slidetag WDL
#1440 opened Dec 2, 2024 by aawdeh Loading…
3 tasks
53
PD-2800: Add filtered option as output to MergeStarOutput task
#1437 opened Nov 26, 2024 by aawdeh Loading…
3 tasks
11
Bump cross-spawn from 7.0.3 to 7.0.6 in /website dependencies Pull requests that update a dependency file javascript Pull requests that update Javascript code
#1430 opened Nov 19, 2024 by dependabot bot Loading…
1
Bump braces from 3.0.2 to 3.0.3 in /website dependencies Pull requests that update a dependency file javascript Pull requests that update Javascript code
#1427 opened Nov 14, 2024 by dependabot bot Loading…
1
PD-2739 Add peakcalling to Multiome ATAC subpipeline DO NOT MERGE
#1391 opened Oct 18, 2024 by aawdeh Loading…
3 tasks
108
[DRAFT] TSPS-183 Beagle imputation hg38 wdl and associated support wdls
#1333 opened Jul 15, 2024 by mmorgantaylor Loading…
3 tasks
13
Updating picard version in QC.wdl to avoid error with updated Platform Name (PL) in the SAM/BAM/CRAM file.
#1257 opened Apr 1, 2024 by jiveshs98 Loading…
2
Update JointGenotyping.inputs.json
#1216 opened Feb 27, 2024 by ldgauthier Loading…
1 of 3 tasks
7
Remove fastqprocess and mergebam tasks when running star once DO NOT MERGE
#1195 opened Feb 2, 2024 by aawdeh Loading…
3 tasks
10
PD-2501 StarSolo on one machine DO NOT MERGE
#1194 opened Feb 2, 2024 by aawdeh Loading…
3 tasks
4
Add examples using public gs links from the broad-references-private sources
#997 opened Jun 1, 2023 by mr-c Loading…
5
Add in index file for azure
#961 opened Apr 11, 2023 by vsmalladi • Draft
3 tasks
4
Add option for requester pays into joint genotyper (import gvcf)
#846 opened Oct 23, 2022 by yfarjoun Loading…
5
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