Code

Lk pd 2814 adding gtf h5ad#1470

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ekiernan merged 21 commits intodevelopbroadinstitute/warp:developfrom lk-PD-2814-adding-gtf-h5adbroadinstitute/warp:lk-PD-2814-adding-gtf-h5adCopy head branch name to clipboardJan 15, 2025

+54-31

Commits

Commits on Jan 8, 2025

• testing h5adutils with new docker

  ekiernan

  committed
  e2fef9f

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• added GTF file to adata_uns

  ekiernan

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  12b99ac

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• changing name of warp_tools_docker variable so be version agnostic

  ekiernan

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  87b73d5

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• Merge branch 'develop' into lk-PD-2814-adding-gtf-h5ad

  ekiernan

  authored
  8458661

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• removed quotes

  ekiernan

  committed
  2fec7b8

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Commits on Jan 9, 2025

• testing all wdls with new warp-tools docker

  ekiernan

  committed
  38d731c

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Commits on Jan 10, 2025

• Merge branch 'develop' into lk-PD-2814-adding-gtf-h5ad

  ekiernan

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  ab17c78

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• updated h5ad with gs:// path for reference_gtf_file

  ekiernan

  committed
  13fbf2a

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• testing gtf path

  ekiernan

  committed
  7b5cae5

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• testing new script and new logging for gtf path

  ekiernan

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  cb69b95

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• updated gtf_path

  ekiernan

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  6f10319

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Commits on Jan 11, 2025

• testing fix for wdl gtf_path syntax

  ekiernan

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  422ad3b

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Commits on Jan 13, 2025

• added annotation file as string to h5ad utils task

  ekiernan

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  29a37fc

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• Updated pipeline_versions.txt with all pipeline version information

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  ee6c5b7

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• updating gtf_path for remaining scripts

  ekiernan

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  4e74a75

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• updated warp-tools docker to versioned docker 2.6.0

  ekiernan

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  e1ee332

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• Merge branch 'develop' into lk-PD-2814-adding-gtf-h5ad

  ekiernan

  authored
  f30b7cc

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• Merge branch 'lk-PD-2814-adding-gtf-h5ad' of https://github.com/broadinstitute/warp into lk-PD-2814-adding-gtf-h5ad

  ekiernan

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  f7cf151

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• changelog updates

  ekiernan

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  9b6b190

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• Updated pipeline_versions.txt with all pipeline version information

  actions-user

  committed
  343595e

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Commits on Jan 15, 2025

• removing unnecessary code from atac createfragmentfile

  ekiernan

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  a01cc57

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