remove quotes around probability_threshold

broadinstitute · Feb 4, 2025 · e1cdc14 · e1cdc14
1 parent 6a5f83f
commit e1cdc14
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/pipelines/skylab/atac/atac.wdl b/pipelines/skylab/atac/atac.wdl
@@ -675,7 +675,7 @@ task PeakCalling {
     Int disk_size = 500
     Int mem_size = 64
     Int nthreads = 4   
-  }
+  }gi
   
   parameter_meta {
     annotations_gtf: "GTF for SnapATAC2 to calculate TSS sites of fragment file."
@@ -704,7 +704,7 @@ task PeakCalling {
     min_counts = "~{min_counts}"
     min_tsse = "~{min_tsse}"
     max_counts = "~{max_counts}"
-    probability_threshold = "~{probability_threshold}"
+    probability_threshold = ~{probability_threshold}
 
     print("Peak calling starting...")
     atac_data = snap.read(metrics_h5ad)