updated manifest, setup.py and fixed bug in snp config (#55)

bioforensics · Jul 27, 2023 · fa9d709 · fa9d709
1 parent b87c29b
commit fa9d709
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diff --git a/MANIFEST.in b/MANIFEST.in
@@ -13,3 +13,4 @@ include lusSTR/tests/data/snps/*
 include lusSTR/tests/data/RU_stutter_test/*
 include lusSTR/tests/data/NGS_stutter_test/*
 include lusSTR/tests/data/kinsnps/*
+include lusSTR/tests/data/lusstr_output/*
diff --git a/lusSTR/cli/config.py b/lusSTR/cli/config.py
@@ -55,6 +55,10 @@ def edit_snp_config(config, args):
             data["references"] = None
         if args.strand:
             data["strand"] = args.strand
+        if args.input:
+            data["samp_input"] = args.input
+        else:
+            data["samp_input"] = os.getcwd()
         return data
 
 

diff --git a/setup.py b/setup.py
@@ -31,6 +31,7 @@
             "lusSTR/tests/data/RU_stutter_test/*",
             "lusSTR/tests/data/NGS_stutter_test/*",
             "lusSTR/tests/data/kinsnps/*",
+            "lusSTR/tests/data/lusstr_output/*",
             "lusSTR/workflows/*",
             "lusSTR/wrappers/*",
         ]