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fixed setup.py
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rnmitchell committed Jul 22, 2023
1 parent cfb2710 commit b87c29b
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2 changes: 1 addition & 1 deletion README.md
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Expand Up @@ -209,7 +209,7 @@ types: ```all``` choices are "all", "i" (identity SNPs only), "p" (phenotype onl
nofilter: ```False``` (True/False); if no filtering is desired at the format step; if False, will remove any allele designated as Not Typed (invoke using the ```--nofiltering```)

### convert settings
strand: ```forward``` (forward/uas); indicates which orientation to report the alleles for the SigPrep SNPs; uas indicates the orientation as reported by the UAS or the forward strand
strand: ```forward``` (forward/uas); indicates which orientation to report the alleles for the SigPrep SNPs; uas indicates the orientation as reported by the UAS or the forward strand
references: ```None```; list IDs of the samples to be run as references in EFM; default is no reference samples
separate: ```False``` (True/False); if want to separate samples into individual files for use in EFM
thresh: ```0.03```; Analytical threshold value
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3 changes: 2 additions & 1 deletion setup.py
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Expand Up @@ -30,7 +30,8 @@
"lusSTR/tests/data/snps/*",
"lusSTR/tests/data/RU_stutter_test/*",
"lusSTR/tests/data/NGS_stutter_test/*",
"lusSTR/tests/data/kinsnps/*" "lusSTR/workflows/*",
"lusSTR/tests/data/kinsnps/*",
"lusSTR/workflows/*",
"lusSTR/wrappers/*",
]
},
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