neurometry

auxiliary package to interface with navis and fafbseg

Main Operations

neurometry/cave.py

• How to interact with the CAVEClient to:
  • extract cutouts from FAFB (Flywire)
  • access predicted synapse table
  • access predicted neurotransmitter per synapse
  • access cell identity table
  • filter said tables

neurometry/ic.py

• How to interact with the imageryclient to:
  • access segmentation layer
  • access raw image
  • create masks
  • plot accessed data and overlays

neurometry/ml.py

• How to create an example CNN architecture
• How to use a image augmentation library

neutrometry/viz.py

• Helper functions to plot pie charts, scattergrams, bar charts, histograms, heatmaps