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yeast 8.5.0#260

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edkerk wants to merge 67 commits intomasterSysBioChalmers/yeast-GEM:masterfrom develSysBioChalmers/yeast-GEM:develCopy head branch name to clipboard

+117,029-108,798

Commits

Commits on Sep 18, 2018

• feat: memote config

  BenjaSanchez

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• fix: make travis_deploy.sh executable

  BenjaSanchez

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• fix: dos2unix travis_deploy.sh & memote.ini

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• feat: travis_wait for long builds

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• fix: skip slow test

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• fix: skip 2nd slow test

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Commits on Sep 19, 2018

• fix: skip 3rd slow test

  BenjaSanchez

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• fix: skip 4th slow test

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• fix: history report building

  BenjaSanchez

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• fix: moving report file

  BenjaSanchez

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• fix: report location

  BenjaSanchez

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• feat: new badges

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Commits on Sep 21, 2018

• fix: avoid switching branch

  BenjaSanchez

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Commits on Sep 26, 2018

• fix: switch to SQLite

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  BenjaSanchez

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• test: SQLite

  BenjaSanchez

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Commits on Nov 23, 2018

• fix: skip commits with no .xml changes

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Commits on Dec 3, 2018

• Merge branch 'devel' into feat/memote

  BenjaSanchez

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• fix: skip thermodynamic test

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  BenjaSanchez

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• doc: git lfs requirement

  BenjaSanchez

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Commits on Jul 15, 2020

• feat: add yaml validation

  mihai-sysbio

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Commits on Jul 16, 2020

• refactor: rely on ci-requirements

  mihai-sysbio

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• Merge branch 'feat/yaml-validation' into feat/memote

  mihai-sysbio

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Commits on Jul 17, 2020

• feat: from travis to gh actions

  mihai-sysbio

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• refactor: use second repo instance

  mihai-sysbio

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• feat: remove travis integration

  mihai-sysbio

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• feat: allow workflow to fail on error

  mihai-sysbio

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• feat: split memote workflow

  mihai-sysbio

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• feat: memote workflow converts model, uses solver time limit

  mihai-sysbio

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• fix: make sure .env exists

  mihai-sysbio

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• feat: add badge for memote history action

  mihai-sysbio

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Commits on Oct 5, 2020

• fix-rxn.annot: combine glycolysis + gluconeogenesis

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  BenjaSanchez

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Commits on Oct 6, 2020

• Merge pull request #251 from SysBioChalmers/fix/gluconeogenesis

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  BenjaSanchez

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Commits on Nov 23, 2020

• chore: update COBRA

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  BenjaSanchez

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• chore: update RAVEN

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Commits on Nov 24, 2020

• chore-rxn: move KEGG pathway ids to proper field

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  BenjaSanchez

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Commits on Nov 25, 2020

• Merge pull request #253 from SysBioChalmers/chore/update-toolboxes

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  BenjaSanchez

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Commits on Apr 6, 2021

• fix-rxn/met: solves #252 and #254

  edkerk

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Commits on Apr 7, 2021

• Merge branch 'devel' into feat/yaml-validation

  mihai-sysbio

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• fix: deal with special characters in README.md

  edkerk

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Commits on Apr 9, 2021

• fix: valid yaml

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  edkerk

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Commits on Apr 10, 2021

• Merge branch 'fix/various' into feat/yaml-validation

  mihai-sysbio

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• Merge pull request #236 from mihai-sysbio/feat/yaml-validation

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  edkerk

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• chore: update *requirements.txt

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  edkerk

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Commits on Apr 11, 2021

• Merge branch 'devel' into feat/memote

  mihai-sysbio

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• fix: missisng ci-requirements

  mihai-sysbio

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• Merge branch 'fix/requirements' into feat/memote

  mihai-sysbio

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• fix: indentation in yml

  mihai-sysbio

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Commits on Apr 13, 2021

• fix: yml fields correction

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  edkerk

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Commits on Apr 23, 2021

• Merge pull request #256 from SysBioChalmers/fix/requirements

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  edkerk

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• Merge pull request #239 from mihai-sysbio/feat/memote

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  mihai-sysbio

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Commits on Apr 26, 2021

• Merge branch 'devel' into feat/memote

  mihai-sysbio

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Commits on Apr 27, 2021

• refactor: memote history without re-writing SBML

  mihai-sysbio

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Commits on May 14, 2021

• refactor: restructure most folders

  edkerk

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• refactor: update io scripts to new folders

  edkerk

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• refactor: update folder tree in all files

  edkerk

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• refactor: update README.md

  edkerk

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Commits on Jun 15, 2021

• fix: saveYeastModel recognize last update date

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  edkerk

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Commits on Jun 24, 2021

• fix: rename model files to yeast-GEM

  edkerk

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Commits on Jun 29, 2021

• Partial revert "fix: rename model files to yeast-GEM"

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  edkerk

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• fix: again rename model-files

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  edkerk

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• doc: replace email address

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  edkerk

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• Merge pull request #257 from SysBioChalmers/refactor/standard-GEM

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  edkerk

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Commits on Jun 30, 2021

• Merge branch 'devel' into feat/memote

  mihai-sysbio

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• refactor: rename ComplementaryScripts to code

  mihai-sysbio

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• refactor: update model path in memote config

  mihai-sysbio

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Commits on Jul 1, 2021

• style: rename workflows

  mihai-sysbio

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• Merge pull request #162 from SysBioChalmers/feat/memote

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  edkerk

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