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v3.0.1
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@EnriqueDoster EnriqueDoster released this 09 Apr 07:03
· 31 commits to master since this release
v3.0.1
ef9772d

Updates in this version v3.0.1:

  • Updates to work with the latest SNP confirmation software.
  • Addition of option to specify "--amr_index" and "--host_index" and skip the automatic creation of the bwa index
  • Automate download of minikraken_8GB_202003 database when using kraken.
  • Fixes to handling unmapped paired reads during host removal. Only keeping paired reads when neither read aligned to the host.
  • Fixes to singularity config file.
  • Updates to READ.ME
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