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do we want to add "neutral"? #336

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merged 3 commits into from
Oct 4, 2024
Merged

do we want to add "neutral"? #336

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aa0d60f
do we want to add "neutral"?
edeutsch Sep 27, 2024
3fbbd9e
Update psi-ms.obo
mobiusklein Oct 4, 2024
490bb96
Merge branch 'master' into edeutsch-theo-neutral-mass
mobiusklein Oct 4, 2024
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9 changes: 5 additions & 4 deletions psi-ms.obo
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I would support this change if it doesn't break anything. The definition is clear enough but people may not bother to look at the definition. Better to be clear since the adduct ion mass (the "M+H" mass) is sometimes also called the "theoretical mass" in the context of MS.

Original file line number Diff line number Diff line change
@@ -1,7 +1,7 @@
format-version: 1.2
data-version: 4.1.179
date: 18:08:2024 07:15
saved-by: Chris Bielow
data-version: 4.1.180
date: 04:10:2024 07:15
saved-by: Joshua Klein
auto-generated-by: OBO-Edit 2.3.1
default-namespace: MS
namespace-id-rule: * MS:$sequence(7,0,9999999)$
Expand Down Expand Up @@ -7312,11 +7312,12 @@ is_a: MS:1001085 ! protein-level identification attribute

[Term]
id: MS:1001117
name: theoretical mass
name: theoretical neutral mass
def: "The theoretical neutral mass of the molecule (e.g. the peptide sequence and its modifications) not including its charge carrier." [PSI:PI]
is_a: MS:1001105 ! peptide sequence-level identification attribute
relationship: has_units UO:0000221 ! dalton
relationship: has_value_type xsd:double ! The allowed value-type for this CV term
synonym: "theoretical mass" EXACT []

[Term]
id: MS:1001118
Expand Down
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