CrossScannerRegistration

CrossScannerRegistration is a python package that provides functionality for cross-scanner registration of pathology images, presented in:

Luisa Theelke, Frauke Wilm, Christian Marzahl, Christof A Bertram, Robert Klopfleisch, Andreas Maier, Marc Aubreville, Katharina Breininger "Iterative Cross-Scanner Registration for Whole Slide Images" (2021). ICCV CDpath

Features

• Cross-scanner registration of pathology images
• Support for all openslide-compatible image formats
• Easy-to-use command line interface (CLI)

Installation

1. Clone the repository:

   git clone https://github.com/DeepPathology/CrossScannerRegistration.git

2. Navigate to the project directory:

   cd CrossScannerRegistration

3. Install the required dependencies:

   pip install -r requirements.txt

Usage

python iterative_registration.py --source <path_to_source_image> --target <path_to_target_image>

Replace <path_to_source_image> with the path to the source image, and <path_to_target_image> with the path to the target image.

Contributing

Contributions are welcome! If you find any bugs or have suggestions for improvement, please open an issue or submit a pull request. Make sure to follow the project's code of conduct.