Skip to content

Latest commit

 

History

History
51 lines (35 loc) · 1.58 KB

README.md

File metadata and controls

51 lines (35 loc) · 1.58 KB

CrossScannerRegistration

CrossScannerRegistration is a python package that provides functionality for cross-scanner registration of pathology images, presented in:

Luisa Theelke, Frauke Wilm, Christian Marzahl, Christof A Bertram, Robert Klopfleisch, Andreas Maier, Marc Aubreville, Katharina Breininger "Iterative Cross-Scanner Registration for Whole Slide Images" (2021). ICCV CDpath

Registration

Features

  • Cross-scanner registration of pathology images
  • Support for all openslide-compatible image formats
  • Easy-to-use command line interface (CLI)

Installation

  1. Clone the repository:

    git clone https://github.com/DeepPathology/CrossScannerRegistration.git

  2. Navigate to the project directory:

    cd CrossScannerRegistration

  3. Install the required dependencies:

    pip install -r requirements.txt

Usage

python iterative_registration.py --source <path_to_source_image> --target <path_to_target_image>

Replace <path_to_source_image> with the path to the source image, and <path_to_target_image> with the path to the target image.

Contributing

Contributions are welcome! If you find any bugs or have suggestions for improvement, please open an issue or submit a pull request. Make sure to follow the project's code of conduct.