All files committed

.Rbuildignore

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+^renv$
+^renv\.lock$
+^.*\.Rproj$
+^\.Rproj\.user$
+
+^README\.Rmd$
+^README\.md$
+^NEWS\.md$
+^CONDUCT\.md$
+^LICENSE\.md$
+^data-raw$
+
+^\.gitignore$
+^\.travis\.yml$
+^codecov\.yml$
+^_pkgdown\.yml$
+^appveyor\.yml$
+^docs$
+^pkgdown$
+^cran-comments\.md$
+^CRAN-SUBMISSION$
+^doc$
+^Meta$

.Rprofile

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+source("renv/activate.R")

.gitignore

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+.Rproj.user
+.Rhistory
+.RData
+.Ruserdata
+inst/doc
+/doc/
+/Meta/

CONDUCT.md

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+# Contributor Code of Conduct
+
+As contributors and maintainers of this project, we pledge to respect all people who 
+contribute through reporting issues, posting feature requests, updating documentation,
+submitting pull requests or patches, and other activities.
+
+We are committed to making participation in this project a harassment-free experience for
+everyone, regardless of level of experience, gender, gender identity and expression,
+sexual orientation, disability, personal appearance, body size, race, ethnicity, age, or religion.
+
+Examples of unacceptable behavior by participants include the use of sexual language or
+imagery, derogatory comments or personal attacks, trolling, public or private harassment,
+insults, or other unprofessional conduct.
+
+Project maintainers have the right and responsibility to remove, edit, or reject comments,
+commits, code, wiki edits, issues, and other contributions that are not aligned to this 
+Code of Conduct. Project maintainers who do not follow the Code of Conduct may be removed 
+from the project team.
+
+Instances of abusive, harassing, or otherwise unacceptable behavior may be reported by 
+opening an issue or contacting one or more of the project maintainers.
+
+This Code of Conduct is adapted from the Contributor Covenant 
+(http:contributor-covenant.org), version 1.0.0, available at 
+http://contributor-covenant.org/version/1/0/0/

DESCRIPTION

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+Type: Package
+Package: NeEDS4BigData
+Title: New Experimental Design based Subsampling Methods for Big Data
+Version: 1.0.0
+Authors@R: c(
+    person("Amalan", "Mahendran", , "[email protected]", role = c("aut", "cre"),
+           comment = c(ORCID = "0000-0002-0643-9052"))
+           )
+Maintainer: The package maintainer <[email protected]>
+Description: Subsampling methods for big data under different models and assumptions.
+    Starting with linear regression and leading to Generalised Linear Models, softmax
+    regression and quantile regression. Specially, the model robust subsampling method 
+    proposed by Mahendran et al (2023) (<doi:10.1007/s00362-023-01446-9>) when multiple 
+    models can describe the big data.
+License: MIT + file LICENSE
+URL:
+  https://github.com/Amalan-ConStat/NeEDS4BigData,https://amalan-constat.github.io/NeEDS4BigData/index.html
+BugReports: https://github.com/Amalan-ConStat/NeEDS4BigData/issues
+Imports:
+    dplyr,
+    foreach,
+    gam,
+    ggh4x,
+    ggplot2,
+    matrixStats,
+    psych,
+    Rdpack,
+    Rfast,
+    rlang,
+    stats,
+    tidyr
+RdMacros: Rdpack
+Suggests: 
+    doParallel,
+    ggpubr,
+    kableExtra,
+    knitr,
+    parallel,
+    rmarkdown,
+    spelling,
+    testthat (>= 3.0.0)
+Encoding: UTF-8
+Language: en-GB
+LazyData: true
+LazyDataCompression: xz
+RoxygenNote: 7.3.1
+Depends: 
+    R (>= 3.5.0)
+Config/testthat/edition: 3
+VignetteBuilder: knitr

LICENSE

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+YEAR: 2024
+COPYRIGHT HOLDER: NeEDS4BigData authors

LICENSE.md

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+# MIT License
+
+Copyright (c) 2024 NeEDS4BigData authors
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.

NAMESPACE

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+# Generated by roxygen2: do not edit by hand
+
+S3method(plot_Beta,A_L_OptimalSubsampling)
+S3method(plot_Beta,A_OptimalSubsamplingMC)
+S3method(plot_Beta,AoptimalSubsampling)
+S3method(plot_Beta,Leverage)
+S3method(plot_Beta,LocalCaseControl)
+S3method(plot_Beta,ModelMisspecified)
+S3method(plot_Beta,ModelRobust)
+S3method(plot_LmAMSE,ModelMisspecified)
+S3method(plot_Utility,A_L_OptimalSubsampling)
+S3method(plot_Utility,ModelRobust)
+export(ALoptimalGLMSub)
+export(AoptimalGauLMSub)
+export(AoptimalMCGLMSub)
+export(GenGLMdata)
+export(GenModelMissGLMdata)
+export(GenModelRobustGLMdata)
+export(LCCsampling)
+export(LeverageSampling)
+export(modelMissLinSub)
+export(modelMissLogSub)
+export(modelMissPoiSub)
+export(modelRobustLinSub)
+export(modelRobustLogSub)
+export(modelRobustPoiSub)
+export(plot_Beta)
+export(plot_LmAMSE)
+export(plot_Utility)
+import(foreach)
+import(ggplot2)
+import(stats)
+importFrom(Rdpack,reprompt)
+importFrom(Rfast,rowprods)
+importFrom(dplyr,group_by)
+importFrom(dplyr,summarise)
+importFrom(gam,s)
+importFrom(ggh4x,facet_grid2)
+importFrom(matrixStats,rowSums2)
+importFrom(psych,tr)
+importFrom(rlang,.data)
+importFrom(tidyr,pivot_longer)
+importFrom(tidyr,starts_with)

NEWS.md

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 # NeEDS4BigData 1.0.0
 
-* Initial CRAN submission.
+- Initial CRAN submission.

NeEDS4BigData.Rproj

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+Version: 1.0
+
+RestoreWorkspace: Default
+SaveWorkspace: Default
+AlwaysSaveHistory: Default
+
+EnableCodeIndexing: Yes
+UseSpacesForTab: Yes
+NumSpacesForTab: 2
+Encoding: UTF-8
+
+RnwWeave: Sweave
+LaTeX: pdfLaTeX
+
+AutoAppendNewline: Yes
+StripTrailingWhitespace: Yes
+
+BuildType: Package
+PackageUseDevtools: Yes
+PackageInstallArgs: --no-multiarch --with-keep.source
+PackageRoxygenize: rd,collate,namespace,vignette
+
+SpellingDictionary: en_GB