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@AMTL-BDMU

AMTL-BDMU

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  1. kariton kariton Public

    Masking of flagged regions and lineage assignment

    Python 1 1

  2. Figaro Figaro Public

    Pipeline for analyzing HIVDR samples sequenced using Oxford Nanopore Technologies (ONT).

    HTML 1 1

  3. submission-impossible submission-impossible Public

    semi-automated SRA submission scripts

    Jupyter Notebook 1 1

  4. primer-schemes primer-schemes Public

    Forked from artic-network/primer-schemes

    Primer schemes for real-time genome epidemiology

    Python

  5. mbl-artic mbl-artic Public

    Nextflow

  6. subsam_phylo subsam_phylo Public

    Snakemake workflow for subsampling sequences for phylogenetic/phylodynamic anlaysis.

    Python

Repositories

Showing 10 of 11 repositories
  • Figaro Public

    Pipeline for analyzing HIVDR samples sequenced using Oxford Nanopore Technologies (ONT).

    AMTL-BDMU/Figaro’s past year of commit activity
    HTML 1 1 0 0 Updated Dec 18, 2024
  • submission-impossible Public

    semi-automated SRA submission scripts

    AMTL-BDMU/submission-impossible’s past year of commit activity
    Jupyter Notebook 1 1 0 0 Updated Oct 31, 2024
  • coverage_calculator Public

    coverage calculator for whole genome assembly

    AMTL-BDMU/coverage_calculator’s past year of commit activity
    Python 0 0 0 0 Updated May 15, 2024
  • mNGS_SC2 Public

    metagenomic analysis of sarscov2 patients

    AMTL-BDMU/mNGS_SC2’s past year of commit activity
    R 0 0 0 0 Updated Feb 20, 2024
  • Karumata Public
    AMTL-BDMU/Karumata’s past year of commit activity
    Python 0 0 0 0 Updated Oct 25, 2023
  • TBtree Public
    AMTL-BDMU/TBtree’s past year of commit activity
    Nextflow 0 0 0 0 Updated Oct 10, 2023
  • primer-scheme-v5.3.2 Public
    AMTL-BDMU/primer-scheme-v5.3.2’s past year of commit activity
    Python 0 CC-BY-4.0 0 0 0 Updated Oct 9, 2023
  • kariton Public

    Masking of flagged regions and lineage assignment

    AMTL-BDMU/kariton’s past year of commit activity
    Python 1 1 1 0 Updated Sep 7, 2023
  • subsam_phylo Public

    Snakemake workflow for subsampling sequences for phylogenetic/phylodynamic anlaysis.

    AMTL-BDMU/subsam_phylo’s past year of commit activity
    Python 0 0 0 0 Updated Aug 17, 2023
  • mbl-artic Public
    AMTL-BDMU/mbl-artic’s past year of commit activity
    Nextflow 0 0 0 0 Updated Jul 31, 2023
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