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update align.py command #12

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2 changes: 1 addition & 1 deletion USER-GUIDE.md
Original file line number Diff line number Diff line change
Expand Up @@ -89,7 +89,7 @@ python /dls/science/groups/i04-1/conor_dev/xchem-align/scripts/collate.py -c <yo
The next step is performing local alignments of your ligand bound models and their associated crystallographic maps.

```commandline
python /dls/science/groups/i04-1/conor_dev/xchem-align/scripts/align.py -d <your upload directory> -x <your xtalforms file> -a <your assemblies file>
python /dls/science/groups/i04-1/conor_dev/xchem-align/scripts/align.py -d <your upload directory> -x <your crystalforms.yaml file>
```

## 5. Upload to Fragalysis
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